View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_high_6 (Length: 426)
Name: NF12203_high_6
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 137 - 352
Target Start/End: Original strand, 38452874 - 38453086
Alignment:
| Q |
137 |
tggattacgctcttaatcaatgatgagtggaaaaactgaacccctttggattttcttgtggaattcgtgtacctcataatctgtttacattctctatcca |
236 |
Q |
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| T |
38452874 |
tggattacgctc---atcaatgatgagtggaaaaactgaacccctttggattttcttgtggaattcatgtacctcttaatctgtttacaatctctatcca |
38452970 |
T |
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| Q |
237 |
taccaaaatgttcatgtcagtgtttcaaatattagacttacaatattaaacacagcctatattataaattatttcttatactaatctgatttgggaatca |
336 |
Q |
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| T |
38452971 |
taccaaaatgtttacgtcagtgtttcaaatattctacttgcaatattaagcagaacttctattatgaattatttctgatactaatctgatttgagaatca |
38453070 |
T |
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| Q |
337 |
agaagcaagtgtgcat |
352 |
Q |
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| T |
38453071 |
agcagcaagtgcgcat |
38453086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 256 - 411
Target Start/End: Complemental strand, 39849581 - 39849429
Alignment:
| Q |
256 |
gtgtttcaaatattagacttacaatattaaacacagcctatattataaattatttcttatactaatctgatttgggaatcaagaagcaagtgtgcatann |
355 |
Q |
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| T |
39849581 |
gtgtttcaaatattatacttacaatatcaaacacagcctatattataaattatttcttatactaatctgatttgggaatcgagaagcaagtgtgcat--- |
39849485 |
T |
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| Q |
356 |
nnnnnnncaaaccgtccagacatttcttaaaaacccttgaagccatctactctata |
411 |
Q |
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| T |
39849484 |
tttttttcaaaccgtccagacattttttaaaaacccttgaagccatctaccctata |
39849429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 39849919 - 39849801
Alignment:
| Q |
13 |
tgtgactatgatctggtctctaatcatcctgcataagttgaaactaataatcatacttcagacatgaagttg--atgagtcaaaagtgaacagagaagca |
110 |
Q |
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| T |
39849919 |
tgtgactatgatctggtctctaatcatcttgaataagttgaaactaataatcatacttcagacatgaagttgatatgagtcaaaagtgaacatagaagca |
39849820 |
T |
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| Q |
111 |
aactaaatactcaatagcc |
129 |
Q |
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| T |
39849819 |
aactaaatactaaatagcc |
39849801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 38637822 - 38637727
Alignment:
| Q |
128 |
cctcccatctggattacgctcttaatcaatgatgagtggaaaaactgaacccctttggattttcttgtggaattcgtgtacctcataatctgttta |
223 |
Q |
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| T |
38637822 |
cctcccatctagattacgcccttgatcaatgatgagtggaaaaactaagcccttttggattttatcgtagaattcatgtacctcttaatctgttta |
38637727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 34544256 - 34544309
Alignment:
| Q |
193 |
tgtggaattcgtgtacctcataatctgtttacattctctatccataccaaaatgtt |
248 |
Q |
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| T |
34544256 |
tgtggaattcatgtacct--taacctgtttacattctctacccatactaaaatgtt |
34544309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 44475682 - 44475642
Alignment:
| Q |
29 |
tctctaatcatcctgcataagttgaaactaataatcatact |
69 |
Q |
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| T |
44475682 |
tctctaatcatcctgaataagttgaaactaataatcatact |
44475642 |
T |
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