View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_10 (Length: 407)
Name: NF12203_low_10
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 37877080 - 37876692
Alignment:
| Q |
16 |
catttttgtcgtcctcgtcggattctggatataataatgcaaatgatggtatgattgtgactgcagccggagctgaccatatgaatgagcaattggttaa |
115 |
Q |
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| T |
37877080 |
catttttgtcgtcctcgtcggattctggatataataatgcaaatgatggtatgattgtgactgctgccggagctgaccatatgaatgagcaattggttaa |
37876981 |
T |
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| Q |
116 |
gaagggattgttatctaggggtaaacaatcacttaaagctatttatctatctgctagaacgggtggatttccaacacaagatcatgaaagggataaattc |
215 |
Q |
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| T |
37876980 |
gaagggattgttatctaggggtaaacaatcacttaaagctatttatctatctgctagaacgggtggatttccaacacaagatcatgaaagggataaattt |
37876881 |
T |
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| Q |
216 |
gagtctgatgggtgtggtctggagatgaaatgtattcaaccgtcgttgaaagaggttcctagtgtgcctttggttgttgatcatttgccggaattatccg |
315 |
Q |
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| T |
37876880 |
gagtctgatgggtgtggtctggagatgaaatgtattcaaccgtctttgaaagaggttcctagtgtgcctttggttgttgatcatttgccggaattatcgg |
37876781 |
T |
|
| Q |
316 |
aaccttcaatgttgatttcgaatagtttgaggaatgtggtttatgatgcacttccggctttaattcataggaagaaatggttaatgatg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37876780 |
aaccttcaatgttgatttcgaatagtttgaggaatgtggtttatgatgcacttccggctttaattcatgggaagaaatggttaatgatg |
37876692 |
T |
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