View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_15 (Length: 290)
Name: NF12203_low_15
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 42892248 - 42892526
Alignment:
| Q |
1 |
caaacagtttggttgcactcttgagattgtcaccaacaaatcgcaagaaggttcacaattttgcaaaggctttggtgggataggtgggatgctgcgttac |
100 |
Q |
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| T |
42892248 |
caaacagtttggttgcactcttgagattgtcaccaacaaatcgcaagaaggttcacaattttgcaaaggctttggtgggataggtgggatgctgcgttac |
42892347 |
T |
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| Q |
101 |
cagcttgatatgagaacatttgatgatttttctgatgatggaagtgtgtctgatgacaaataggaatcaatgaaatcctccctactactggtgcaggaaa |
200 |
Q |
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| T |
42892348 |
cagcttgatatgagaacatttgatgatttttctgatgatggaagtgtgtctgatgacaaataggaatcaatgaaatcctccctactactggtgcaggaaa |
42892447 |
T |
|
| Q |
201 |
gggaggccaaaatacctgcaccggtgtgggaggtggctgcacgtgctgctgctgctcctcctcttcctcatatgtctgt |
279 |
Q |
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| T |
42892448 |
gggaggccaaaatacctgcaccggtgtgggaggtggctgcacgtgctgctgctgctcctcctcttcctcatatgtctgt |
42892526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 28908396 - 28908664
Alignment:
| Q |
1 |
caaacagtttggttgcactcttgagattgtcaccaacaaatcgcaagaaggttcacaattttgcaaaggctttggtgggataggtgggatgctgcgttac |
100 |
Q |
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| T |
28908396 |
caaacagtttggttgcactctcgtgattgttaccgatgaatcacaagaaggttcactgttttgcaaaggtttgggtgggataggtgggatcttgcgttac |
28908495 |
T |
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| Q |
101 |
cagcttgatatgagaacatttgatgatttttctgatgatggaagtgtgtctgatgacaaataggaatcaatgaaatcctccctactactggtgcaggaaa |
200 |
Q |
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| T |
28908496 |
cagcttgatatgaaaacatttgacgagttttctgatgatggagatgtgtctgacgacaaataggaatcaatgaaatgctccctattactggtgcaggaaa |
28908595 |
T |
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| Q |
201 |
gggaggccaaaatacctgcaccggtgtgggaggtggctgcacgtgctgctgctgctcctcctcttcctc |
269 |
Q |
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| T |
28908596 |
gggaggccaaaatacctgcaccagtatgggaggtggctgcacgtgctgctgttgctcctcctcttcctc |
28908664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 28921571 - 28921833
Alignment:
| Q |
7 |
gtttggttgcactcttgagattgtcaccaacaaatcgcaagaaggttcacaattttgcaaaggctttggtgggataggtgggatgctgcgttaccagctt |
106 |
Q |
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| T |
28921571 |
gtttggttgcacgctcgagtttgtcaccaataaatcacaagaaggctcacagttttgcaggggttttggtgggataggtgggatcttgcgctaccagctt |
28921670 |
T |
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| Q |
107 |
gatatgagaacatttgatgatttttctgatgatggaagtgtgtctgatgacaaataggaatcaatgaaatcctccctactactggtgcaggaaagggagg |
206 |
Q |
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| T |
28921671 |
gatatgagaacatttgatgatttttctgatgatggaggcgtgtatgaagacgaatagcaatcaatgaaatgctgcctaccactggtgcaggaaagggagg |
28921770 |
T |
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| Q |
207 |
ccaaaatacctgcaccggtgtgggaggtggctgcacgtgctgctgctgctcctcctcttcctc |
269 |
Q |
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| T |
28921771 |
ccaaagtacctgcactagtatggggggcggtagcatgtgctgctgctgctgctcctcctcctc |
28921833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 32763470 - 32763362
Alignment:
| Q |
32 |
accaacaaatcgcaagaaggttcacaattttgcaaaggctttggtgggataggtgggatgctgcgttaccagcttgatatgagaacatttgatgattttt |
131 |
Q |
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||||||||||| |||||||| ||||| ||||||| ||| |||||||| || || || ||||| || |||||||||||||| ||| |||||||||| || | |
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| T |
32763470 |
accaacaaatctcaagaagggtcacagttttgcagagggtttggtggtattggaggtatgcttcgctaccagcttgatatcagatcatttgatgagttat |
32763371 |
T |
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| Q |
132 |
ctgatgatg |
140 |
Q |
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| T |
32763370 |
ctgatgatg |
32763362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 44877941 - 44877907
Alignment:
| Q |
106 |
tgatatgagaacatttgatgatttttctgatgatg |
140 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44877941 |
tgatgtgagaacatttgatgatttttctgatgatg |
44877907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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