View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_17 (Length: 265)
Name: NF12203_low_17
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_17 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: scaffold0999 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3050 - 3180
Alignment:
| Q |
1 |
ttaacattgaacaaactttcttgtcatgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataccttttagtttcttctttcttac |
100 |
Q |
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| T |
3050 |
ttaacattgaacaaactttcttgtcatgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataacttttagtatcttctttcttac |
3149 |
T |
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| Q |
101 |
accataaatcataaatgttattttgattctt |
131 |
Q |
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| T |
3150 |
accataaatcatagatgtaattttgattctt |
3180 |
T |
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Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13153785 - 13153917
Alignment:
| Q |
1 |
ttaacattgaacaaac--tttcttgtcatgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataccttttagtttcttctttctt |
98 |
Q |
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| T |
13153785 |
ttaacattgaacaaacaatttcttgacatgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataccttttagtttcttctttctt |
13153884 |
T |
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| Q |
99 |
acaccataaatcataaatgttattttgattctt |
131 |
Q |
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| T |
13153885 |
acaccataaatcatagatgtaattttgattctt |
13153917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 3762228 - 3762163
Alignment:
| Q |
183 |
gggaggtgtgatgggg--taagaaggtttgttgggtaaagtggttgacggtatgcctacttcgatc |
246 |
Q |
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| T |
3762228 |
gggaggtgtgatggggggtaagaaggtttgttgggtaaagtggtcgacggtatgcctacctcgatc |
3762163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 11474492 - 11474405
Alignment:
| Q |
58 |
catcttctatatattcaataccttttagtttcttctttcttacaccataaatcataaatgttattttgattctttctataccattaga |
145 |
Q |
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|||||||| |||| |||||||||||||||| || | |||||||||||||||||| |||| ||||| | |||||||| ||||||| |
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| T |
11474492 |
catcttctgtatacccaataccttttagtttgctcatacttacaccataaatcatagatgtcatttttcatttttctatatcattaga |
11474405 |
T |
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