View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_18 (Length: 262)
Name: NF12203_low_18
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 13967549 - 13967780
Alignment:
| Q |
20 |
ggacggtttccaagacacactcttcgtcgaatcccaacgccaattctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgccttt |
119 |
Q |
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| T |
13967549 |
ggacggtttccaagacacactctacgtccaatcccaacgtcaattctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgccttt |
13967648 |
T |
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| Q |
120 |
ggagttttccaaaattgcaaactaatttgtagaatgccagcaaaaggccaacaatgtctagtaatcgcaggtggacgagataaacaaaacagtgcaactg |
219 |
Q |
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| T |
13967649 |
ggagttttccaaaattgcaaactaatttgtagagtgccagcaaaaggccaaaaatgtctagtaaccgcaggtggacgagataaacaaaacagtgcaagtg |
13967748 |
T |
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| Q |
220 |
ctctcgttttcctaagttctcacttcacaggt |
251 |
Q |
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| T |
13967749 |
ctctcgttttcctaagttctcacttcacaggt |
13967780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 13960401 - 13960510
Alignment:
| Q |
36 |
acactcttcgtcgaatcccaacgccaattctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaatt |
135 |
Q |
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| T |
13960401 |
acactcttcgccgaatcccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaact |
13960500 |
T |
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| Q |
136 |
gcaaactaat |
145 |
Q |
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| T |
13960501 |
gcaaactaat |
13960510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 49871090 - 49871008
Alignment:
| Q |
60 |
caattctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaact |
142 |
Q |
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| T |
49871090 |
caattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaact |
49871008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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