View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12203_low_2 (Length: 636)
Name: NF12203_low_2
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 20 - 620
Target Start/End: Complemental strand, 39849497 - 39848897
Alignment:
| Q |
20 |
agaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatat |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39849497 |
agaggaaagtaaatattcaatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatat |
39849398 |
T |
|
| Q |
120 |
aacatgtatgtattgatgttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcatcttctgagagggcgattttatgctaga |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39849397 |
aacatgtaagtattgatgttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcatcttctgagagggcgattttatggtaga |
39849298 |
T |
|
| Q |
220 |
gtggtgagagtaaacccttatcatacaggcaggcatacatgaattatcaaggttaaaagctttagcatgtcaaacggaccactaggatgtaacttccgag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39849297 |
gtggtgagagtaaacccttatcatacaggcaggcatacatgaattatcaaggttaaaagctttaacatgtcaaacggaccactaggatgtaacttccgag |
39849198 |
T |
|
| Q |
320 |
gctgtgtcgacgcctactcctgctgaacctccacctgttgtgcctcgtgcacaaacttagactcgggacatgctgaggctctggctctggctcgggctcc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39849197 |
gctgtgtcgacgcctactcctgctgaacctccacctgttgtgcctcgtgcacaaacttagactcgggacatgctgaggctctggctctggctctggctcc |
39849098 |
T |
|
| Q |
420 |
taagagtctgagtctgtcacctttgactttcctcgtgcgcttctgctttgttgaggcagtcatgctcatcctgttatccatgtgtgcgtccatatctgaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39849097 |
taagagtctgagtctgtcacctttgactttcctcgtgcgcttctgctttgttgaggcagtcatgctcatcctgttatccatgtgtgcgtccatatctgaa |
39848998 |
T |
|
| Q |
520 |
acatccacaaattcaaagagaaatcaaaatactgaacatcaagccctatccagcaatcaagtcccaagtgataaattatgataaaaattaaaataaggaa |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39848997 |
acatccacaaattcaaagagaaatcaaaatactgaacatcaagccctatccagcaatcaagtcccaagtgataaattatgataaaaattaaaataaggaa |
39848898 |
T |
|
| Q |
620 |
a |
620 |
Q |
| |
|
| |
|
|
| T |
39848897 |
a |
39848897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 3981494 - 3981351
Alignment:
| Q |
24 |
gaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataaca |
123 |
Q |
| |
|
||||||||||||| |||||||||||| || | |||||||||||||||||||| | |||||| ||||| || ||||| | |||| | ||| |||||| |
|
|
| T |
3981494 |
gaaagtaaatattagatgcattgcatatggttaacaaataaaccaaccataagtagtctactgaagataagcaactccacataatataaaacacataaca |
3981395 |
T |
|
| Q |
124 |
tgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
167 |
Q |
| |
|
|||| ||||| || |||| |||||| ||||||||||| |||||| |
|
|
| T |
3981394 |
tgtaagtatttatcttcatcctacgttgtttgatacataataca |
3981351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 33973285 - 33973436
Alignment:
| Q |
20 |
agaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaag--actagtaactcaatcacatatg--atac |
115 |
Q |
| |
|
||||||||||||||| | |||| |||| |||||||||||| ||||||||| | ||| | |||||| |||| || ||||||| | ||| ||| | | |
|
|
| T |
33973285 |
agaggaaagtaaatacttgatgtattgaatttgatgaacacataaaccaatcgtaagtagtctactgaagacacacgtaactctacaacagatggaacat |
33973384 |
T |
|
| Q |
116 |
atataacatgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
167 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
33973385 |
atataacatgtaagtattgatgcgcagcccacgctgtttgatacataataca |
33973436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University