View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_21 (Length: 247)
Name: NF12203_low_21
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 44697728 - 44697506
Alignment:
| Q |
20 |
agcatcaaccctaccatcataattacacataaagtgataactcaagacatcaacctcattcttcccatgaccttaagatgactatgacttactcatttat |
119 |
Q |
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| T |
44697728 |
agcatcaaccctaccatcataattacacataaagtgataactcaagacatcaacctcattcttcccatgaccttaagatgactatgacttactcatttat |
44697629 |
T |
|
| Q |
120 |
gctctcaaaatttacatgacttactagccacaaccttctcatcctttggtttcttcatagtacatttcctcttatgccttctttagtctaaaaagatagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44697628 |
gctctcaaaatttacatgacttactagccacaaccttctcatcctttggtttcttcatagtacatttcctcttatgccttctttagtctaaaaagatagc |
44697529 |
T |
|
| Q |
220 |
attcttacatagtctctgcttct |
242 |
Q |
| |
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||||||||||||| |||| |||| |
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| T |
44697528 |
attcttacatagtttctgtttct |
44697506 |
T |
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