View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12203_low_3 (Length: 617)
Name: NF12203_low_3
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Original strand, 51167784 - 51168369
Alignment:
| Q |
16 |
tgtgtgatcctccacgtgcggtccctaaaggtcgtccatgcactttacaaatgaaaggcagtttggaattgcacaagaaaaattccatcagttgtagtta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51167784 |
tgtgtgatcctccacgtgcggtccctaaaggtcgtccatgcactttacgaatgcaaagcagtttggaattgcacaagaaaaattcaatcagttgtagtta |
51167883 |
T |
|
| Q |
116 |
ttgcattggaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaattacatgctacaagtaattgtgcagttaatttgaa |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51167884 |
ttgcaatggaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaattacatgttacaagtaattgtgcagttaatttgaa |
51167983 |
T |
|
| Q |
216 |
tttttcattttaccatgccaagtttattcagttacaaaccaatgtcttttaggtgtgatatcatcaatggtcaa-tttcaaattccaatgttaaagcttc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51167984 |
tttttcattttaccatgccaagtttattcagttacaaaccaatgtcctttaggtgtgatatcatcaatggtcaactttcaaattccaatgttaaagcttc |
51168083 |
T |
|
| Q |
315 |
tagtttggttgattaagaggtattgttgttattgttttgctggcaatgctatacaattattattttgatcctaaatatattattgttacaagatcatgtt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51168084 |
tagtttggttgattaagaggtattgttgttattgttttgctggcaatgctatacaattattattttgatcctaaatatattattgttacaagatcatgtt |
51168183 |
T |
|
| Q |
415 |
cttctagtgttaattcctagtattggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtggatttctctgatgtgat |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
51168184 |
attctagtgttaattcctagtattggtttgttgcagacctgttttgccaataagggataattttaccgaattcaaaggtagtggatttctctgatgtgat |
51168283 |
T |
|
| Q |
515 |
ttgaggctttggatgcacttatggcgtgattttaggttttggatgcggtcctggtgtgattttccatctatttttctggtgggaat |
600 |
Q |
| |
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| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51168284 |
tctaggctttggatgcacttctggcgtgatttcaggttttggatgtggtcctggtgtgattttccatctatttttctggtgggaat |
51168369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 308 - 600
Target Start/End: Complemental strand, 753111 - 752819
Alignment:
| Q |
308 |
aagcttctagtttggttgattaagaggtattgttgttattgttttgctggcaatgctatacaattattattttgatcctaaatatattattgttacaaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
753111 |
aagcttctagtttggttgattaagaggtattgttgttattgttttgctggtaatgctatacaattataattttgatcctaaatatattattgttacaaga |
753012 |
T |
|
| Q |
408 |
tcatgttcttctagtgttaattcctagtattggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtggatttctctg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
753011 |
tcatgttcttctagtgttaattcctagtattggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtggatttctctg |
752912 |
T |
|
| Q |
508 |
atgtgatttgaggctttggatgcacttatggcgtgattttaggttttggatgcggtcctggtgtgattttccatctatttttctggtgggaat |
600 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752911 |
atgtgattctaggctttggatgcacttatggcgtgattttaggttttggatgcggtcctggtgtgattttccatctatttttctggtgggaat |
752819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 308 - 600
Target Start/End: Original strand, 850398 - 850690
Alignment:
| Q |
308 |
aagcttctagtttggttgattaagaggtattgttgttattgttttgctggcaatgctatacaattattattttgatcctaaatatattattgttacaaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
850398 |
aagcttctagtttggttgattaagaggtattgttgttattgttttgctggtaatgctatacaattataattttgatcctaaatatattattgttacaaga |
850497 |
T |
|
| Q |
408 |
tcatgttcttctagtgttaattcctagtattggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtggatttctctg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850498 |
tcatgttcttctagtgttaattcctagtattggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtggatttctctg |
850597 |
T |
|
| Q |
508 |
atgtgatttgaggctttggatgcacttatggcgtgattttaggttttggatgcggtcctggtgtgattttccatctatttttctggtgggaat |
600 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850598 |
atgtgattctaggctttggatgcacttatggcgtgattttaggttttggatgcggtcctggtgtgattttccatctatttttctggtgggaat |
850690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 65786 - 66079
Alignment:
| Q |
16 |
tgtgtgatcctccacgtgcggtccctaaaggtcgtccatgcactttacaaatgaaaggcagtttggaattgcacaagaaaaattccatcagttgtagtta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
65786 |
tgtgtgatcctccacgtgcggtccctaaaggtcgtccacgcactttacaaatgaaaggcagtttgcaattgcacaagaaaaattcaatcagttgtagtta |
65885 |
T |
|
| Q |
116 |
ttgca-ttggaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaatt-acatgctacaagtaattgtgcagttaatttg |
213 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
65886 |
ttgcaattgaaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaatttacatgttacaagtaactgtgcagttaatttg |
65985 |
T |
|
| Q |
214 |
aatttttcattttaccatgccaagtttattcagttacaaaccaatgtcttttaggtgtgatatcatcaatggtcaatttcaaattccaatgtta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
65986 |
aatttttcattttaccatgccaagtttattcaattacaaaccaatgtcttttaggtgtgatatcatcaatggtcaatttcaaattccaatgtta |
66079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 645 - 1146
Alignment:
| Q |
18 |
tgtgatcctccacgtgcggtccctaaaggtcgtccatgcactttacaaatgaaaggcagtttggaattgcacaagaaaaattccatcagttgtagttatt |
117 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| | ||||||| ||||||||| ||||||||||||| ||| ||| ||| || | |||||||||| |
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| T |
645 |
tgtgatccaccacgtgttgtccctaaaggtcgtccacgtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaatgaagtgtagttatt |
744 |
T |
|
| Q |
118 |
gcattggaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaattacatgctacaagtaattgtgcagttaatttgaatt |
217 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||| |||| ||| ||||||| |
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|
| T |
745 |
gcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaactacatgttacaagtaattatgcaattagcttgaatt |
844 |
T |
|
| Q |
218 |
tttcattttaccatgccaagtttattcagttacaaaccaatgtcttttaggtgtgatatcatcaatggtca-atttcaaattccaatgttaaagc----- |
311 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
845 |
tttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgtgatattatcaatggtcagcgttcaaattccagtgttaaagcttcta |
944 |
T |
|
| Q |
312 |
-ttctagtttggttgattaagaggtattgttgttattgttttgctggcaatgctatacaattattattttgatcctaaatatattattgttacaagatca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||| ||||||||||||| | || |||||||||||||||||| |
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|
| T |
945 |
gttctagtttggttgattaagaggtattggtattattattttgttggcaatgctatatgattattattttgagcataccaatattattgttacaagattg |
1044 |
T |
|
| Q |
411 |
tgttcttctagtgttaattcctagtattggtttgttgcagacctgttttcccaataagggataattttgccgaagtcaaaggtggtggatttctctgatg |
510 |
Q |
| |
|
| |||| | |||||||||||| | |||||||||||||||||| ||| ||| ||| ||||| ||||| |||| ||||||||||||| ||||| || || |
|
|
| T |
1045 |
tattct--ttgtgttaattcctgatgctggtttgttgcagacctgctttgccactaaaggatagttttgtcgaactcaaaggtggtgggtttctatggtg |
1142 |
T |
|
| Q |
511 |
tgat |
514 |
Q |
| |
|
|||| |
|
|
| T |
1143 |
tgat |
1146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 19330708 - 19330757
Alignment:
| Q |
42 |
aaaggtcgtccatgcactttacaaatgaaaggcagtttggaattgcacaa |
91 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||| |||| |
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|
| T |
19330708 |
aaaggtcgtccatgcactctacgaatgaaaggcagtttggaattgtacaa |
19330757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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