View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_5 (Length: 538)
Name: NF12203_low_5
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 257 - 448
Target Start/End: Complemental strand, 48441932 - 48441741
Alignment:
| Q |
257 |
caaattcgacccaaaacttatgcaaaatcaaatgcatgataaaaacacgttcacatgggaagtggagatcaatatgctcaatatgttagagaaagatgca |
356 |
Q |
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| T |
48441932 |
caaattcgacccaaaacttatgcaaaatcaaatgcatgataaaagcacgttcacatgggaagtggagatcaatatgctcaatctgttagagaaagatgcg |
48441833 |
T |
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| Q |
357 |
agtaacctgaatgtccttgaaaaacataccaagatagttctttgattatgttacctgatctatcgcgtactaaactttattattctttgttg |
448 |
Q |
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| T |
48441832 |
agtaacctgaatgtccttgaaaaacataccaagatagttctttgattatgttacctgatatatcgcctactaaactttattattctttgttg |
48441741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 48442169 - 48442066
Alignment:
| Q |
14 |
gtgctcgcaatcccaaaataaactaaccaaaaaagattatagctaacaataaacaaagttatggtaactatttcaattgcatacattttaaccctgtttt |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
48442169 |
gtgctcgcaatcccaaaataaactaatcaaaaaagattatagctaacaataaacaaagttatggtaactatttcaactgtatacattttaaccctgtttt |
48442070 |
T |
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| Q |
114 |
tact |
117 |
Q |
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|||| |
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| T |
48442069 |
tact |
48442066 |
T |
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