View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_6 (Length: 530)
Name: NF12203_low_6
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Complemental strand, 55472058 - 55471558
Alignment:
| Q |
15 |
acaagaaaccgctgctgctttgcttcttaagaggttgcgcgggcatgcaagtcttggtccatttggagaattatatatggagaagagtaaaataaaattc |
114 |
Q |
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| T |
55472058 |
acaagaaaccgctgctgctttgcttcttaagaggttgcacgggcatgcaagtcttggtccatttggagaattatatacggagaagagtaaaataaaattc |
55471959 |
T |
|
| Q |
115 |
caagaaagcttaaaaatattcaactttacatctcagatttgaaattgaaatggtatttcattctttatgtgaatttgggggaggtgaagaatagaagaaa |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55471958 |
caagaaagcttaaaaatatttaactttacatctcagatttgaaattgacatggtatttcattctttatgtgaatttgggggaggtgaagaatagaagaaa |
55471859 |
T |
|
| Q |
215 |
taattagaagcatatcgtaaaatccactttcctgcacttatactggaaacacttgtactcatcttcttttaaacacaataatttaatttgtgatgaaaaa |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55471858 |
taattagaagcatatcgtaaaatccattttcctgcacttatactggaaacacttgtactcatcttcttttaaacacaataatttaatttgtgatgaaaaa |
55471759 |
T |
|
| Q |
315 |
agtcttgccctttagctaatttgattaaaactaattggagttttctgtgcatattaccttctccttcagatctccggtctgaatggctatgttcattgac |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
55471758 |
agtcttgctctttagctaatttgattaaaactaattggagttttctgtgcatattaccttctccttcagatctcaggtctgaagggctatgttcattgac |
55471659 |
T |
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| Q |
415 |
tcctaaagaatccatacttatgcttgctgctcttggttttaaccaaaaccaaaatagaaacatatttattgctggttctaatttgtaaagagatcgctca |
514 |
Q |
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| T |
55471658 |
tcctaaagaatccatacttatgcttgctgctcttggttttaaccaaaaccaaaatagaaacatatttattgctggttctaatttgtatagagatcgctca |
55471559 |
T |
|
| Q |
515 |
c |
515 |
Q |
| |
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| |
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| T |
55471558 |
c |
55471558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 249 - 456
Target Start/End: Original strand, 55439748 - 55439955
Alignment:
| Q |
249 |
cacttatactggaaacacttgtactcatcttcttttaaacacaataatttaa--tttgtgatgaaaaaagtcttgccctttagctaatttgattaaaact |
346 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||| || | | ||||||| | ||||||| ||| | |
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| T |
55439748 |
cacttatactggaaacacttgtactcgtcttcttttaaacacaataattttaattttgagatgaaaaatgttt--ctctttagcaactttgatttaaagt |
55439845 |
T |
|
| Q |
347 |
aattggagttttctgtgcatattaccttctccttcagatctccggtctgaatggctatgttcattgactcctaaagaatccatacttatgcttgctgctc |
446 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||| ||||||| ||| |||||||||| || ||||||||||||| |
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| T |
55439846 |
aattggagttttctgtgcagattaccttctccttcagagctcaggtctgaagggctatgtccattgacacctgaagaatccatcctcatgcttgctgctc |
55439945 |
T |
|
| Q |
447 |
ttggttttaa |
456 |
Q |
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|||| ||||| |
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| T |
55439946 |
ttggctttaa |
55439955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 68 - 252
Target Start/End: Original strand, 55439505 - 55439688
Alignment:
| Q |
68 |
ttggtccatttggagaattatatatggagaagagtaaaataaaattccaagaaagcttaaaaatattcaactttacatctcagatttgaaattgaaatgg |
167 |
Q |
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|||||||||||||||||||| || ||||||||||| ||| ||| |||||||||||||| |||||| | ||||||||||||||||||||||||| |||| |
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| T |
55439505 |
ttggtccatttggagaattaaatttggagaagagtgaaa-aaagttccaagaaagcttcaaaatacttggctttacatctcagatttgaaattgacatgg |
55439603 |
T |
|
| Q |
168 |
tatttcattctttatgtgaatttgggggaggtgaagaatagaagaaataattagaagcatatcgtaaaatccactttcctgcact |
252 |
Q |
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|| |||||| ||||||||||||||||||||||||||| ||| |||| |||| |||||||||||| | ||||| ||||||||||| |
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| T |
55439604 |
tagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgcact |
55439688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 55439436 - 55439479
Alignment:
| Q |
26 |
ctgctgctttgcttcttaagaggttgcgcgggcatgcaagtctt |
69 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| ||||| |
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| T |
55439436 |
ctgctggtttgcttcttaagaggttgcgtgggcatgcaggtctt |
55439479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 68 - 252
Target Start/End: Original strand, 43059377 - 43059560
Alignment:
| Q |
68 |
ttggtccatttggagaattatatatggagaagagtaaaataaaattccaagaaagcttaaaaatattcaactttacatctcagatttgaaattgaaatgg |
167 |
Q |
| |
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|||||||||||||||||||| || ||||||||||| ||| ||| |||||||||||||| |||||| | ||||||||||||||||||||||||| |||| |
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| T |
43059377 |
ttggtccatttggagaattaaatttggagaagagtgaaa-aaagttccaagaaagcttcaaaatacttggctttacatctcagatttgaaattgacatgg |
43059475 |
T |
|
| Q |
168 |
tatttcattctttatgtgaatttgggggaggtgaagaatagaagaaataattagaagcatatcgtaaaatccactttcctgcact |
252 |
Q |
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|| |||||| ||||||||||||||||||||||||||| ||| |||| |||| |||||||||||| | ||||| ||||||||||| |
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| T |
43059476 |
tagctcattccttatgtgaatttgggggaggtgaagaagagaggaaagaattggaagcatatcgtgagatccattttcctgcact |
43059560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 43059316 - 43059351
Alignment:
| Q |
34 |
ttgcttcttaagaggttgcgcgggcatgcaagtctt |
69 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
43059316 |
ttgcttcttaagaggttgcgcgggcatgcaggtctt |
43059351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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