View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_7 (Length: 492)
Name: NF12203_low_7
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 8067832 - 8067374
Alignment:
| Q |
14 |
cagagactaaaatagagtaacctaacgattacctattgagagttggtcatattcatcaggattgatctgatgtttatatcatgatagttgcttgatatat |
113 |
Q |
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| T |
8067832 |
cagagactaaaatagagtaacctaacgattacctattgagagttggtcatattcatcaggattggtctgatgtttatatcatgatagttgcttgatatat |
8067733 |
T |
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| Q |
114 |
gttttcttatatgaaatcatgataatgttatgtgtatcctgtgtttggttcgatacatgtttgcaatacctagaagagtaatatggaaattataagtagg |
213 |
Q |
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| T |
8067732 |
gtttgcttatatgaaatcatgataatgttatgtgtatcctgtgtttggtttgatacatgtttgcaatacctagaagggtaatatggaaattataagcagg |
8067633 |
T |
|
| Q |
214 |
gttttatgatgttttggttattaccaaaattatattttagttgactaattctcaatattatatgaattcagttcaaagatacaaaaaattgtactttagt |
313 |
Q |
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| T |
8067632 |
gttttatgatgttttggttattaccaaaattatattttagttgactaattctca--attatatgaattcagttcaaagatacaaaaaattgtactttagt |
8067535 |
T |
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| Q |
314 |
tgactgattctcaatataatataatttcggtcaatacgaagaaactccattatcatgtttgtgaggttgatttggcccaaattttgtgaggttgggacta |
413 |
Q |
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| T |
8067534 |
tgactgattctcaatataatataatttcggtcaatacgaagaaactccattatcatgtttgtgaggttgatttggcccaaattttgtgaggttgggacta |
8067435 |
T |
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| Q |
414 |
tgagattaaaga-ttggcttttaagagagtttgaattcttttgatacttgaaggtggaacc |
473 |
Q |
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| T |
8067434 |
tgagattaaagatttggcttttaagagagtttgaattcttttgatacttgaaggtggaacc |
8067374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 165 - 281
Target Start/End: Original strand, 8080486 - 8080605
Alignment:
| Q |
165 |
gatacatgtttgcaatacctagaagagtaatatggaaattataagtagggttttatga---tgttttggttattaccaaaattatattttagttgactaa |
261 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | | | |
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| T |
8080486 |
gatatatgtttgcaatacctagaatggtaatatggaaattataagtagggttttatgatgttgttttggttattaccaaaattatactttagttaattga |
8080585 |
T |
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| Q |
262 |
ttctcaatattatatgaatt |
281 |
Q |
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| T |
8080586 |
ttctcaatataatatgaatt |
8080605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 8080071 - 8080170
Alignment:
| Q |
14 |
cagagactaaaatagagtaacctaacgattacctattgagagttggtcatattcatcaggattgatctgatgtttatatcatgatagttgcttgatatat |
113 |
Q |
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| T |
8080071 |
cagagactacaatagagtaacctaatgattacctattgaaagttggtcattttcaaca-gattgatctgatgtttatatgatgatagttggttaatatat |
8080169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 8071558 - 8071675
Alignment:
| Q |
171 |
tgtttgcaatacctagaagagtaatatggaaattataagtagggttttatga---tgttttggttattaccaaaattatattttagttgactaattctca |
267 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||||||| ||| ||| |
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| T |
8071558 |
tgtttgcaataccaagaagggtaatatggaaattataaggagggttttatgatgttgttttggttactaccaaagctatagtttagttgactgattttca |
8071657 |
T |
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| Q |
268 |
atattatatgaattcagt |
285 |
Q |
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|||| | ||||||||||| |
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| T |
8071658 |
atataacatgaattcagt |
8071675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 8080239 - 8080289
Alignment:
| Q |
112 |
atgttttcttatatgaaatcatgataatgttatgtgtatcctgtgtttggt |
162 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
8080239 |
atgtttgcttatatgaaatcatgataatgctatgtgtatcctgagtttggt |
8080289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 8080563 - 8080630
Alignment:
| Q |
298 |
aaaattgtactttagttgactgattctcaatataatataatttcggtcaatacgaagaaactccatta |
365 |
Q |
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| T |
8080563 |
aaaattatactttagttaattgattctcaatataatatgaattttgttaatacgaagaaactccatta |
8080630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 8078078 - 8078027
Alignment:
| Q |
402 |
aggttgggactatgagattaaagattggcttttaagagagtttgaattcttt |
453 |
Q |
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|||||||||||| ||||||||||| | ||||| |||||||||||||||||| |
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| T |
8078078 |
aggttgggactaagagattaaagaccgacttttgagagagtttgaattcttt |
8078027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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