View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12203_low_9 (Length: 410)
Name: NF12203_low_9
Description: NF12203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12203_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 37843015 - 37842632
Alignment:
| Q |
12 |
tgtgctcctcttccaataatatattgatcacttaggttctctgtagcctgcaacactagtttctgaaggtcaggtggtttatcttcacctgatacgttga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37843015 |
tgtgctcctcttccaataatatattgatcacttaggttctctgtagcctgcaacactagtttctgaaggtcaggtggtttatcttcacctgatacgttga |
37842916 |
T |
|
| Q |
112 |
attcgtaagcatatctggttccaatcaatccagctcccctaccaatataccattgctttagatcttccgtatctgattcctttctaaggaaacgccttct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842915 |
attcgtaagcatatctggttccaatcaatccagctcccctaccaatataccattgctttagatcttccgtatctgattcctttctaaggaaacgcctttg |
37842816 |
T |
|
| Q |
212 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842815 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag |
37842716 |
T |
|
| Q |
312 |
--acatggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgag |
393 |
Q |
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| T |
37842715 |
acacatggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgag |
37842632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 212 - 393
Target Start/End: Complemental strand, 28089684 - 28089502
Alignment:
| Q |
212 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttg--g |
309 |
Q |
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||||||||| ||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||| |||| ||||||||||||||| | |
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| T |
28089684 |
aattattatcaccagcacatcagaaatcaatattgaggatccaagttctatcatcacaatttgaacattaccgataactttatgatcggttgatttgtag |
28089585 |
T |
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| Q |
310 |
agacatggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgag |
393 |
Q |
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| T |
28089584 |
acacatggatttacataactagttttaatgcaa-ttcaacaactaaaacatatgagaggattgcccatgaatgatgatggtgag |
28089502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 232 - 393
Target Start/End: Complemental strand, 37831472 - 37831309
Alignment:
| Q |
232 |
cagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagaca--tggatttacataact |
329 |
Q |
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||||||| ||||| |||||||||| ||| |||| ||||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||||||||| |
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| T |
37831472 |
cagaaataaatattgaggatccaagttctatcaacacaatttgaacattaccgatacctttgtgatcagttgacttgtagacacatggatttacataact |
37831373 |
T |
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| Q |
330 |
agttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgag |
393 |
Q |
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||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
37831372 |
agtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatggtgag |
37831309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 37837193 - 37837013
Alignment:
| Q |
215 |
tattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagaca |
314 |
Q |
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|||||| |||| |||| ||||||||||||| |||||||||| | | ||||| ||||||||||||| |||||||||||| ||||| ||||||||| ||||| |
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| T |
37837193 |
tattatcaccatcacagcagaaatcaatattgaggatccaagtactatcattacaatttgaacataactgatacctttatgatcagttgatttgtagaca |
37837094 |
T |
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| Q |
315 |
--tggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgag |
393 |
Q |
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||||||||||| ||||||| |||||||| | |||||||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
37837093 |
catggatttacattactagttataatgcaattcaaacaacttacacataggaaaggattacccatgaatgatgatggtgag |
37837013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 37837390 - 37837332
Alignment:
| Q |
12 |
tgtgctcctcttccaataatatattgatcacttaggttctctgtagcctgcaacactag |
70 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||||||| ||| ||||| |
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| T |
37837390 |
tgtgctcctcttccaataatatactgatcatttaggttctctgtagcctccaaaactag |
37837332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 37844882 - 37844814
Alignment:
| Q |
12 |
tgtgctcctcttccaataatatattgatcacttaggttctctgtagcctgcaacactagtttctgaagg |
80 |
Q |
| |
|
|||||||| || ||||||||||| |||||| |||||||||||||||||| ||| ||||| | ||||||| |
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| T |
37844882 |
tgtgctcccctgccaataatatagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagg |
37844814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 37850730 - 37850657
Alignment:
| Q |
12 |
tgtgctcctcttccaataatatattgatcacttaggttctctgtagcctgcaacactagtttctgaaggtcagg |
85 |
Q |
| |
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|||||||||| ||||||||||| ||||| |||||||||| ||||||| ||||||| | || ||||||||||| |
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| T |
37850730 |
tgtgctcctccaccaataatataccgatcatttaggttctcagtagcctccaacacttgcttatgaaggtcagg |
37850657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 37850428 - 37850392
Alignment:
| Q |
357 |
acatatgagaggattacccatgaatgatgatggtgag |
393 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
37850428 |
acataggagaggattacccatgaatgatgatggtgag |
37850392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 393
Target Start/End: Complemental strand, 36865943 - 36865760
Alignment:
| Q |
212 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttg--g |
309 |
Q |
| |
|
||||||||| ||| |||| |||||| ||||| |||| ||||| ||| ||||||||||||||||||||| |||||||||||||||| |||| |||| | |
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| T |
36865943 |
aattattatcaccgccacaccagaaacaaatattgagggtccaagttctatcatcacaatttgaacattaatgatacctttgtgatcagttggtttgtag |
36865844 |
T |
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| Q |
310 |
agacatggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgag |
393 |
Q |
| |
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| ||||||||||| | |||||||||||| |||| | ||||| || ||||||| |||||||||||||||||| ||||| |||||| |
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| T |
36865843 |
atacatggatttataaaactagttttaaagcaattcaaacatctaacacataggagaggattacccatgaacgatgacggtgag |
36865760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 36866080 - 36866019
Alignment:
| Q |
24 |
ccaataatatattgatcacttaggttctctgtagcctgcaacactagtttctgaaggtcagg |
85 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| | ||||||| | | ||||||||||| |
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| T |
36866080 |
ccaataatatattgatcatttaggttctctgtagcttccaacacttgatcatgaaggtcagg |
36866019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 45561945 - 45561900
Alignment:
| Q |
15 |
gctcctcttccaataatatattgatcacttaggttctctgtagcct |
60 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45561945 |
gctcctcttccaataatataccgatcacttaggttcgatgtagcct |
45561900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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