View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12204_high_2 (Length: 545)
Name: NF12204_high_2
Description: NF12204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12204_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 117 - 380
Target Start/End: Complemental strand, 27219913 - 27219651
Alignment:
| Q |
117 |
atgacactcacacacatatatagttacattcaatcacttttatgttttcaaattattacttgtattaatttcatgtctggtgtcggtatgaacatttcat |
216 |
Q |
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| T |
27219913 |
atgacactcacacacacatatggttacattcaatcacttttatgttttcaaattgttacttgtattaatttcatgtctggtgtcggtatgaacatttcat |
27219814 |
T |
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| Q |
217 |
aggtagacggattgaattgaatttagtgtaaggatttaatttgaacatactcaacagtgtaaaactctattaaaaatgtacattgaataatatctcatca |
316 |
Q |
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| T |
27219813 |
aggtagacg-actgaattgaatttagtgtaaggatttaatttgtacatactcaacagtgtaaaactctattaaatatgtacattgaataatatctcatca |
27219715 |
T |
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| Q |
317 |
tgtaaatatttgtaaagatatttaggtgcatattaatgtggccttgtgatagtctcgtgagcat |
380 |
Q |
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| T |
27219714 |
tgtaaatatttgtaaagatatttaggtacatattaatgtggccttgtggtagtcccgtgagcat |
27219651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 27220066 - 27219914
Alignment:
| Q |
4 |
gagcagaacctgtggtatgtatgaattgaatgttatatattataatagttgtagtaaactattttagattaaacaaattaaaagtgtgtctggtgtctga |
103 |
Q |
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| T |
27220066 |
gagcaaaacctatggtatgtatgaattgaatgttatatattataatagttgtagtaaactattttagattaaacaaattaaaggcgtgtctggtgtctga |
27219967 |
T |
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| Q |
104 |
gatgtatctatagatgacactcacacacatatatagttacattcaatcacttt |
156 |
Q |
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| T |
27219966 |
catgtatctatagatgacactcacacacacatatggttacattcaatcacttt |
27219914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 423 - 545
Target Start/End: Complemental strand, 27219523 - 27219401
Alignment:
| Q |
423 |
ttgtggtatgatttggttgaatgtatgcgtcaaacagttttacattgtctgatacaactataacaaattaataattaatatattaagtgtaacttttaaa |
522 |
Q |
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| T |
27219523 |
ttgtggtatgatttggttgaatgtatgcgtaaaacagttttacattgcctgatacaactataacaaattaataattaatatcttaagtgtaacttttaaa |
27219424 |
T |
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| Q |
523 |
tgtgtgattgtgtctgtagtcca |
545 |
Q |
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| T |
27219423 |
tgtatgattgtgtctgtagtcca |
27219401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 230 - 364
Target Start/End: Complemental strand, 27217153 - 27217018
Alignment:
| Q |
230 |
gaattgaatttagtgtaaggatttaatttgaacatactcaa-cagtgtaaaactctattaaaaatgtacattgaataatatctcatcatgtaaatatttg |
328 |
Q |
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| T |
27217153 |
gaattgaatttagtgtaaggatttaatttgtacatactcgatcagtgtaaaactgtatttacaatgtacattgaataatatctcatcatgtaaatatttg |
27217054 |
T |
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| Q |
329 |
taaagatatttaggtgcatattaatgtggccttgtg |
364 |
Q |
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| T |
27217053 |
tggagatatttaggaacataataaagtggccttgtg |
27217018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 475
Target Start/End: Complemental strand, 27217022 - 27216970
Alignment:
| Q |
423 |
ttgtggtatgatttggttgaatgtatgcgtcaaacagttttacattgtctgat |
475 |
Q |
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| T |
27217022 |
ttgtggtataatttggttgaatgtatgcgtaaaacagttttacaatgtctgat |
27216970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 24047831 - 24047803
Alignment:
| Q |
231 |
aattgaatttagtgtaaggatttaatttg |
259 |
Q |
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| T |
24047831 |
aattgaatttagtgtaaggatttaatttg |
24047803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 27219254 - 27219282
Alignment:
| Q |
377 |
gcatggtatttgtatagagtgtgactatg |
405 |
Q |
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| T |
27219254 |
gcatggtatttgtatagagtgtgactatg |
27219282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 361
Target Start/End: Complemental strand, 37580592 - 37580461
Alignment:
| Q |
232 |
attgaatttagtgtaagg-atttaatttgaacatactcaa-cagtgtaaaactctattaaaaatgtacattgaataatatctcatcatgtaaatatttgt |
329 |
Q |
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| T |
37580592 |
attgaatttagtgtaggggatttaatttgtatatactcaatcagtgtaaaactgtcttttatatgtatatcaaatcatatctcatcgtgtaaatatttgt |
37580493 |
T |
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| Q |
330 |
aaagatatttaggtgcatattaatgtggcctt |
361 |
Q |
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| T |
37580492 |
agagatataaaggagcataataaagtggcctt |
37580461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 8013854 - 8013891
Alignment:
| Q |
139 |
gttacattcaatcacttttatgttttcaaattattact |
176 |
Q |
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| T |
8013854 |
gttacattcaatcacttatattttttcaaattattact |
8013891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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