View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12204_high_4 (Length: 504)
Name: NF12204_high_4
Description: NF12204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12204_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Complemental strand, 36955674 - 36955199
Alignment:
| Q |
12 |
aacctgtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955674 |
aaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
36955575 |
T |
|
| Q |
112 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955574 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaatt |
36955475 |
T |
|
| Q |
212 |
gcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcgg |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955474 |
gcacttacaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcgg |
36955375 |
T |
|
| Q |
312 |
ctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaagaaatg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955374 |
ctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaagaaatg |
36955275 |
T |
|
| Q |
412 |
tggttgttacaaaatgtgagagagttgtgcagggagagatgaaacaatgcacaaaatgtgtgtattgtgaacaatt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36955274 |
tggttgttacaaaatgtgagagagttgtgcagggagagatgaaacaatgcacaaaatgtgtgtattgtgaacaatt |
36955199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 36951186 - 36950795
Alignment:
| Q |
12 |
aacctgtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
36951186 |
aaccggtgaatggaaaatcaccccaaggatgttcctttaaaca-ggtgaagtaagattctcaaaagcatcaggaagcacgtgaatgaaaccggtggccaa |
36951088 |
T |
|
| Q |
112 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaatt |
211 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||| |
|
|
| T |
36951087 |
aatcacaccagcagcaaaggctttaataatgaaaaatatatctttttcagggcttaacgccggtatcactttgcctagaagtggaatacaaacaccaatt |
36950988 |
T |
|
| Q |
212 |
gcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcgg |
311 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| || ||||| | |||||||| ||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
36950987 |
ccacttgcaactagtattgatactaaagctgctatcttataacgaagggctttggatttgtctctatcttcatcttctttatcgcatgtgcattctgcgg |
36950888 |
T |
|
| Q |
312 |
ctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaag |
406 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||| ||| ||||| ||||||||| ||| ||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
36950887 |
ctattagagtcggggttacaaggaagatcaagatagagaaaacaaagactttgttat--ttttttaatcccatttcaatggttagaaactcaaag |
36950795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 36938962 - 36938568
Alignment:
| Q |
12 |
aacctgtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
36938962 |
aaccagtgaatggaaaatcaccccaaggatgtttctttaaacgaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggttgccaa |
36938863 |
T |
|
| Q |
112 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaatt |
211 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
36938862 |
aatcacaccagcagcaaaggctttgatgatgaaaaatatatctttttcggggcttaacgccggtatcactttgccaagaagtggaatacaaacaccaatt |
36938763 |
T |
|
| Q |
212 |
gcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcgg |
311 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| || ||||| | ||||||| ||||||||||||| |||||| |||||||| |||||||| |||| |
|
|
| T |
36938762 |
ccacttgcaactaatattgatactaaagctgctatcttataacgaagagctttgggtttgtctctatctaaatcttcttcatcacacgtgcattcggcgg |
36938663 |
T |
|
| Q |
312 |
ctattagagttgggattacgaggaagatcaagacagaaaaaactaagactttgatattgtttttgaatcccatttcaattgttagaaacccaaag |
406 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||| ||| ||||| ||||||||| |||||||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
36938662 |
ctattagagtcgggattataaggaatatcaagatagagaaaacaaagactttgttattgttttttaatcccatttcaatggttagaaactcaaag |
36938568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 36993355 - 36993041
Alignment:
| Q |
12 |
aacctgtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
111 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36993355 |
aaccagtgaagggaaaatcaccccaaggatgttcgtttaaacatggagaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggacag |
36993256 |
T |
|
| Q |
112 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaatt |
211 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||| |
|
|
| T |
36993255 |
tatcacaccggcagcaaatgctttgatgataaaaaatatatctttttcagggcttaatgccggtatcactttcccaagaagtgggagacaaacaccaatt |
36993156 |
T |
|
| Q |
212 |
gcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcgg |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |||| ||||| | | |||| || ||||||||||| || ||||||||||| ||||| | |
|
|
| T |
36993155 |
gcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcag |
36993056 |
T |
|
| Q |
312 |
ctattagagttggga |
326 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36993055 |
ctattagagttggga |
36993041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 37018795 - 37018481
Alignment:
| Q |
12 |
aacctgtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
111 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37018795 |
aaccagtgaagggaaaatcaccccaaggatgttcgtttaaacatggagaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggacag |
37018696 |
T |
|
| Q |
112 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttttcagggcttaacgccggtattactttgccaagaagtgggataaaaacaccaatt |
211 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||||| |
|
|
| T |
37018695 |
tatcacaccggcagcaaatgctttgatgataaaaaatatatctttttcagggcttaatgccggtatcactttcccaagaagtgggagacaaacaccaatt |
37018596 |
T |
|
| Q |
212 |
gcacttgcaactaaaattgacactaaagctgctattttgtaacgtaaggctttggctttgtctctatcttcatcttcctcatcacatgtgcattctgcgg |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |||| ||||| | | |||| || ||||||||||| || ||||||||||| ||||| | |
|
|
| T |
37018595 |
gcacttgcaactaatattgacactaaagccgctattttgtagcgtagagcttttgatctgtccctttcttcatcttcttcgtcacatgtgcactctgcag |
37018496 |
T |
|
| Q |
312 |
ctattagagttggga |
326 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37018495 |
ctattagagttggga |
37018481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 36951296 - 36951438
Alignment:
| Q |
12 |
aacctgtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataa |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
36951296 |
aaccggtgaatggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacgtgaatgaaaccggtggccaa |
36951395 |
T |
|
| Q |
112 |
tatcacaccggcagcaaaggttttaatgatgaaaaatatatctttt |
157 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36951396 |
aatcacac---cagcaaaggctttaatgatgaaaaatatatctttt |
36951438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 27253396 - 27253541
Alignment:
| Q |
22 |
tggaaaatcaccccaaggatgttcctttaaacaaggtgaagtaagattctcaaaagcatcaggaagcacatgaatgaaaccggtggataatatcacaccg |
121 |
Q |
| |
|
|||||||||||||||||| | |||||| | |||||| ||| | | | |||| || ||||| ||||| | ||||| |||||||| | || || |||||| |
|
|
| T |
27253396 |
tggaaaatcaccccaaggtttttccttaagacaaggcgaattcaaactctcgaatgcatccggaagtatgtgaataaaaccggttgccaaaattacaccg |
27253495 |
T |
|
| Q |
122 |
gcagcaaaggttttaatgatgaaaaatatatctttttcagggctta |
167 |
Q |
| |
|
|| || |||| |||||| ||||||||||| || |||| |||||||| |
|
|
| T |
27253496 |
gccgcgaaggctttaatcatgaaaaatatgtcatttttagggctta |
27253541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University