View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12204_high_8 (Length: 264)
Name: NF12204_high_8
Description: NF12204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12204_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 29013846 - 29013614
Alignment:
| Q |
16 |
acacaacataacctctttacctttaaacattctatcaaaaccattgttctctgtattctctatggtgaaaatctgggttgaaatatgcataatatcagct |
115 |
Q |
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| T |
29013846 |
acacaacataacctctttacctttaaacattctatcaaaaccattgttctctgtattctctatggtgaaaatctgggttgaaatatgcataatatcagct |
29013747 |
T |
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| Q |
116 |
cgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaatacataaccaaagttgatgcttcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013746 |
cgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaatacataaccaaagttgatgcttcaa |
29013647 |
T |
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| Q |
216 |
ccaacacaaaccctctttggagaacaaagtttt |
248 |
Q |
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| T |
29013646 |
ccaacacaaaccctctttggagaacaaagtttt |
29013614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 29366519 - 29366302
Alignment:
| Q |
31 |
tttacctttaaacattctatcaaaaccattgttctctgtattctctatggtgaaaatctgggttgaaatatgcataatatcagctcgtggagtaagagca |
130 |
Q |
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||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
29366519 |
tttacctttaaacattctatcaaaaccattgttttctatactctctatggtgaaaatatgggttgaaatatgcttaatatcagctcgaggagtaagagca |
29366420 |
T |
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| Q |
131 |
tcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaatacataaccaaagttgatgcttcaaccaacacaaaccctc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366419 |
tcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaatacataaccaaagttgatgcttcaaccaacacaaaccctc |
29366320 |
T |
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| Q |
231 |
tttggagaacaaagtttt |
248 |
Q |
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|||||||||||||||||| |
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| T |
29366319 |
tttggagaacaaagtttt |
29366302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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