View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12204_low_10 (Length: 230)
Name: NF12204_low_10
Description: NF12204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12204_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 579494 - 579292
Alignment:
| Q |
19 |
agtaacatttattctcttaattttctactcattagtgtta---ctcatcagttctcattccagagctaaaattcttcacttagaatactgcctatataac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
579494 |
agtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcacttagaatactgcctatataac |
579395 |
T |
|
| Q |
116 |
tgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg-tatgtacagatcaccaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
579394 |
tgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgttatgtacagatcaccaca |
579295 |
T |
|
| Q |
215 |
ggt |
217 |
Q |
| |
|
||| |
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|
| T |
579294 |
ggt |
579292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 592927 - 593129
Alignment:
| Q |
19 |
agtaacatttattctcttaattttctactcattagtgtta---ctcatcagttctcattccagagctaaaattcttcacttagaatactgcctatataac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592927 |
agtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcacttagaatactgcctatataac |
593026 |
T |
|
| Q |
116 |
tgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg-tatgtacagatcaccaca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
593027 |
tgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgttatgtacagatcaccaca |
593126 |
T |
|
| Q |
215 |
ggt |
217 |
Q |
| |
|
||| |
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|
| T |
593127 |
ggt |
593129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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