View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12204_low_5 (Length: 360)
Name: NF12204_low_5
Description: NF12204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12204_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 36 - 354
Target Start/End: Original strand, 8003982 - 8004300
Alignment:
| Q |
36 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttct |
135 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8003982 |
gaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattcattactgttct |
8004081 |
T |
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| Q |
136 |
atttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacatctattcattttaaactaaa |
235 |
Q |
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||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
8004082 |
atttgtgatgatgttgtggcaagacttttggaactatatcactcagctttgttgcgtgtttgtttttcctgctttagacatctattcattttaaactaaa |
8004181 |
T |
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| Q |
236 |
tagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaaca |
335 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8004182 |
tagtatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcagaaca |
8004281 |
T |
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| Q |
336 |
gcgtattgttgctgcaaaa |
354 |
Q |
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||||||||||||||||||| |
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| T |
8004282 |
gcgtattgttgctgcaaaa |
8004300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 37 - 354
Target Start/End: Complemental strand, 7901123 - 7900806
Alignment:
| Q |
37 |
aaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
136 |
Q |
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||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7901123 |
aaacttggatttgttgtgattgatctatttatatctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattcattactgttcta |
7901024 |
T |
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| Q |
137 |
tttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacatctattcattttaaactaaat |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901023 |
tttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgtgtgtttgattttgctactttagacatctattcattttaaactaaat |
7900924 |
T |
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| Q |
237 |
agcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacag |
336 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7900923 |
agtatttatagttttttaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacag |
7900824 |
T |
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| Q |
337 |
cgtattgttgctgcaaaa |
354 |
Q |
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|||||||| | ||||||| |
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| T |
7900823 |
cgtattgtagttgcaaaa |
7900806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 51518515 - 51518620
Alignment:
| Q |
249 |
tttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgct |
348 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51518515 |
tttctaatcagttgctattgtcctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgttgct |
51518614 |
T |
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| Q |
349 |
gcaaaa |
354 |
Q |
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|||||| |
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| T |
51518615 |
gcaaaa |
51518620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 7904579 - 7904498
Alignment:
| Q |
36 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904579 |
gaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
7904498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 7902954 - 7902873
Alignment:
| Q |
37 |
aaacttgaatttgttgtgattgatctatgtttgtctctttaatgta-tacattttacttcaaacaaaatattaattgaattc |
117 |
Q |
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||||||| |||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7902954 |
aaacttggatttgttgtgattgatctatttatatctctttaatgtaatacattttacttcaaacaaaatattaattgaattc |
7902873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 51518346 - 51518446
Alignment:
| Q |
36 |
gaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttct |
135 |
Q |
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|||||||| |||||||||||||| | ||| | | ||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51518346 |
gaaacttggatttgttgtgattgttatatttctatctgttaaatgtatacattttatttcaaacaaaatattaattgaattcacattccattactgttct |
51518445 |
T |
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| Q |
136 |
a |
136 |
Q |
| |
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| |
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| T |
51518446 |
a |
51518446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 354
Target Start/End: Complemental strand, 1300778 - 1300552
Alignment:
| Q |
133 |
tctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacat------ctattcattt |
226 |
Q |
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|||||||||| ||| || | |||||||||||||||||||||| || ||||||||| || |||| ||||||||||| ||| | ||||| |||| |
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| T |
1300778 |
tctatttgtgctgacgtcatggcaagatttttagaactatatctcttggctttgttgtgtctttg-ttttgctacttgagatgtgcactcctatttattt |
1300680 |
T |
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| Q |
227 |
taaactaaatagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttga |
326 |
Q |
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|||| |||||| ||||| ||||||||||||| ||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1300679 |
caaacgaaatagtatttacagttttctaatcaattgctatcgtcctaccacaacagcctgcagacatttatctgatagatgagccaagtgcatatcttga |
1300580 |
T |
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| Q |
327 |
ttcggaacagcgtattgttgctgcaaaa |
354 |
Q |
| |
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||| |||||||||||| ||||||||||| |
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| T |
1300579 |
ttccgaacagcgtattattgctgcaaaa |
1300552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 1300855 - 1300798
Alignment:
| Q |
79 |
tgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
136 |
Q |
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||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||| |
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| T |
1300855 |
tgtatacattttatttcaaaataaatattaattgaattcctgatccattacggttcta |
1300798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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