View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12204_low_6 (Length: 280)
Name: NF12204_low_6
Description: NF12204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12204_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 15171969 - 15171697
Alignment:
| Q |
1 |
tttcaacagcttgtttccgctctttgtttctgccaccgtaacggtatcgctcaccgcgatctcaaaccgcagaatctcctcctcgacgctgaaggtaatc |
100 |
Q |
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| T |
15171969 |
tttcaacagcttgtttccgctctttgtttctgccaccgtaacggtatcgctcaccgcgatctcaaaccgcagaatctcctcctcgatgctgaaggtaatc |
15171870 |
T |
|
| Q |
101 |
tcaaggtttccgatttcggtctctcggcgttgccggaacagctcaaaaacggtcttctgcatacagcttgtggaacgccggcgtacaccgcgccggagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15171869 |
tcaaggtttccgatttcggtctctcggcgttgccggagcagctcaaaaacggtcttctgcatacagcttgtggtacgccggcgtacaccgcgccggagat |
15171770 |
T |
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| Q |
201 |
tctcggccggattggatacgacggatctaaagctgatgcctggtcttgtggtgttatcctctacgttcttctc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15171769 |
tctcggccggattggatacgacggatctaaagctgatgcctggtcttgtggtgttatcctctacgttcttctc |
15171697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 34017419 - 34017216
Alignment:
| Q |
1 |
tttcaacagcttgtttccgctctttgtttctgccaccgtaacggtatcgctcaccgcgatctcaaaccgcagaatctcctcctcgacgctgaaggtaatc |
100 |
Q |
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|||||||||||||| || || | ||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||| || || |||| |
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| T |
34017419 |
tttcaacagcttgtctctgcgttacgtttctgccaccgtaacggcgtcgctcaccgtgatcttaaaccgcaaaatctcctcctcgacgccgatgggaatc |
34017320 |
T |
|
| Q |
101 |
tcaaggtttccgatttcggtctctcggcgttgccggaacagctcaaaaacggtcttctgcatacagcttgtggaacgccggcgtacaccgcgccggagat |
200 |
Q |
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| T |
34017319 |
tcaaggtttccgatttcggtctctctgctcttcctgaacatctcaaagacggactactccacactgcttgtggtacgccggcgtacactgcgccggagat |
34017220 |
T |
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| Q |
201 |
tctc |
204 |
Q |
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|||| |
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| T |
34017219 |
tctc |
34017216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 54659554 - 54659626
Alignment:
| Q |
52 |
caccgcgatctcaaaccgcagaatctcctcctcgacgctgaaggtaatctcaaggtttccgatttcggtctct |
124 |
Q |
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||||| |||||||| ||| |||||||||||||||||| || ||||||||||| || || ||||| ||||||| |
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| T |
54659554 |
caccgtgatctcaagccggagaatctcctcctcgacgaagacggtaatctcaaagtctctgattttggtctct |
54659626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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