View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12205_high_11 (Length: 331)
Name: NF12205_high_11
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 155 - 318
Target Start/End: Original strand, 6476084 - 6476247
Alignment:
| Q |
155 |
tgcataatgatcgaatttgataaacaaacacagatataaactagtaataacaaattggaatccaacagaagtacctgctattcggatcgtaatagaaacc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6476084 |
tgcataatgatcgaatttgataaacaaacacagatataaactagtaataacaaattggaatccaacagaagtacctgctattcggatcgtaatagaaacc |
6476183 |
T |
|
| Q |
255 |
actgatagaaccatcggtgcatgagaaacaaacgtagtaaaatccagctattgttaacccacag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6476184 |
actgatagaaccatcggtgcatgagaaacaaacgtagtaaaatccagctattgttaacccacag |
6476247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 6475975 - 6476050
Alignment:
| Q |
19 |
gttatatacatccatgcatgttatcagaatccaagtcattgatttttcaataaactagttataaatctggaaatgt |
94 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6475975 |
gttatatacatccatgcatgttatcataatcaaagtcattgatttttcaataaactggttataaatctggaaatgt |
6476050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University