View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_high_3 (Length: 435)
Name: NF12205_high_3
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 6587656 - 6588072
Alignment:
| Q |
18 |
caaggtgttggtccagcaatctatgagctagatgaagataagagggggaaggaaatggaatgggctctcataagattaggatgcaaccctagtgttccag |
117 |
Q |
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| T |
6587656 |
caaggtgttggtccagcaatctatgaactagatgaagataagagggggagggaaatggaatgggctctcataagattaggatgcaaccctagtgttccag |
6587755 |
T |
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| Q |
118 |
cagtgttcattggtggcaagtttgtgggttcagccaacataatcatgacccttcatctcaatggctcactcaagaaaatgcttagagaagctggtgcact |
217 |
Q |
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| T |
6587756 |
cagtgttcattggtggcaagtttgtgggttcagccaacataatcatgacccttcatctcaatggctcactcaagaaaatgcttagagaagctggtgcact |
6587855 |
T |
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| Q |
218 |
ttggctttaggaaaacttgaaatatggaagctcgcattctagtgcaaatgcaaacagccaaaaattgccttttttatataatatcctaaccaagccctc- |
316 |
Q |
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| T |
6587856 |
ttggctttaggaaaacttgaaatatggaagctcgcattctagtgcaaatgcaaacagccaaaaatggccttttttatataatatcctaaccaagccctct |
6587955 |
T |
|
| Q |
317 |
nnnnnnnnnngtgagaccttgcggctttaagaatatgcattgtattagaataatctttgttacctccaatataattttgagttgtacttctgaaactctg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6587956 |
ttttttttttgtgagaccttgcggctttaagaatatgcattgtattagaataatctttgttacctccaatataattttgagttgtacttctgaaactttg |
6588055 |
T |
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| Q |
417 |
tgtacattgtttctcct |
433 |
Q |
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| T |
6588056 |
tgtgcattgtttctcct |
6588072 |
T |
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