View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_high_4 (Length: 426)
Name: NF12205_high_4
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 31455406 - 31454992
Alignment:
| Q |
1 |
tctcttaaaaccttagccaaaaatattaaattttgatcttgtcccataatagaaaaaagctttactttgttttccattttcttcatttcactaagttgct |
100 |
Q |
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| T |
31455406 |
tctcttaaaaccttagccaaaaatattaaattttgatcttggcccataatagaaaaaagctttactttgttttccattttcttcatttcaccaagttgct |
31455307 |
T |
|
| Q |
101 |
tagaaatttccttctttgccttctttctaaagcaatcatactcatatatgctgctttcaatgcttgaagttgaatttcctcgtcttctacgtatagcgga |
200 |
Q |
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| T |
31455306 |
ttgaaatttccttctttgccttctttctaaagcaatcatactcatatatgctgctttcaatgcttgaagttgaatttcctcgtcttctacgtatagccga |
31455207 |
T |
|
| Q |
201 |
ttgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaactacatgcatctaaaagtgtaactgaaccacttaatgaatcttccact |
300 |
Q |
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| T |
31455206 |
ttgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaaccacatgcatctaaaagtgtaactgaaccacttaatgaatcttccact |
31455107 |
T |
|
| Q |
301 |
agcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatcac |
400 |
Q |
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| T |
31455106 |
agcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgtataactcagcaagcacaaccaaatcac |
31455007 |
T |
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| Q |
401 |
tttgaattgtctctg |
415 |
Q |
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| T |
31455006 |
tttgaattgtctctg |
31454992 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 419
Target Start/End: Original strand, 9385376 - 9385465
Alignment:
| Q |
330 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctgcttc |
419 |
Q |
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|||||| |||||| |||| | ||||||||||||||| |||||||| | |||||||||| | ||||| ||||| |||||| |||||||||| |
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| T |
9385376 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctgcttc |
9385465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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