View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_high_5 (Length: 423)
Name: NF12205_high_5
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 38809518 - 38809890
Alignment:
| Q |
19 |
ttaagtgcattttttgaagctcaatataaaaggccttgtaaattatgctaatgacattattcttacacaaataatggaagatgagttaaaggaaaaggtg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38809518 |
ttaagtgcattttttgaagctcaatataaaaggccttgtaaattatgctaatgacattattcttacacaaataatggaagatgagttaaaggaaaaggtg |
38809617 |
T |
|
| Q |
119 |
aaacaagatgaattaccaaagaaaatcaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggag |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38809618 |
aaacaagatgaattaccaaagaaaataaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggag |
38809717 |
T |
|
| Q |
219 |
ctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactt |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38809718 |
ctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactt |
38809817 |
T |
|
| Q |
319 |
tcctcatgaacattattttccttgcagtgtggtatgtaacccttctaagccgtcttcttcctccaattcaacc |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38809818 |
tcctcatgaacattattttccttgcagtgtggtatataacccttctaagccgtcttcttcctccaattcaacc |
38809890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 127 - 332
Target Start/End: Original strand, 38822575 - 38822780
Alignment:
| Q |
127 |
tgaattaccaaagaaaatcaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtt |
226 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
38822575 |
tgaattaccaaagcaaattaagtatagaggagtgaggataaggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtt |
38822674 |
T |
|
| Q |
227 |
tggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactttcctcatg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| || |||||||| | |
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| T |
38822675 |
tggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgcgctgcttttgatatgagaggttcttctgctattctcaattttcctcaag |
38822774 |
T |
|
| Q |
327 |
aacatt |
332 |
Q |
| |
|
|||||| |
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| T |
38822775 |
aacatt |
38822780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 390
Target Start/End: Original strand, 38811678 - 38811959
Alignment:
| Q |
112 |
aaaggtgaaacaagatgaattaccaaagaaaatcaagtatagaggagtaaggataaggccatggggaaaatgtgcagcaga-gattcgagattcggctag |
210 |
Q |
| |
|
||||||||| |||| |||||| ||| | |||||||||||||||||| |||||| |||||||| ||||| | | | | |||| ||||||||||||| |
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| T |
38811678 |
aaaggtgaatgaagaggaattaacaatgcaaatcaagtatagaggagaaaggatccggccatggccaaaatttcccccctaagattagagattcggctag |
38811777 |
T |
|
| Q |
211 |
acatggagctcgagtttggcttggtacatttaacactgctgaggaagctgcaaga-----gcttatgatcgtgctgcttttgaaatgagaggttcttcag |
305 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| | |||||||||||| | |||||||||| |||||||||||||||||||||||||| | |
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| T |
38811778 |
gcatggtgctcgagtttggcttggtacatttaatactagtaaggaagctgcaaaacaagggcttatgatcatgctgcttttgaaatgagaggttctttgg |
38811877 |
T |
|
| Q |
306 |
ctattcttaactttcctcatgaacattattttccttgcagtgtggtatgtaacccttctaagccgtcttcttcctccaattcaac |
390 |
Q |
| |
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| ||||| |||||||| ||||||| |||||||||||| |||||| | ||| |||||||| | |||||||| ||||||||||| |
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|
| T |
38811878 |
ccattctcaactttccacatgaac---attttccttgcaatgtggtttataattcttctaagtcatcttcttcatccaattcaac |
38811959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 328
Target Start/End: Complemental strand, 30736571 - 30736413
Alignment:
| Q |
170 |
ccatggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagctt |
269 |
Q |
| |
|
||||||||||| | ||| || |||||||| || | ||||||| || || || || ||||| || |||||| ||| || ||||||||||||||||||| |
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| T |
30736571 |
ccatggggaaagtttgcggctgagattcgggacccagctagacgcggtgcacgcgtgtggctaggcacatttctcaccgcggaggaagctgcaagagctt |
30736472 |
T |
|
| Q |
270 |
atgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactttcctcatgaa |
328 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||| ||||| |||||||| |||||| |
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| T |
30736471 |
atgatcgtgctgcttttgagatgagaggtgctttagcaattctcaactttccacatgaa |
30736413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 32986341 - 32986435
Alignment:
| Q |
227 |
tggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactttcc |
321 |
Q |
| |
|
|||||||| || || ||||||||||| ||||||||||||||||||||| | ||||||||| | ||||||||||| | || |||||||| ||||| |
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|
| T |
32986341 |
tggcttggcactttcaacactgctgaagaagctgcaagagcttatgatagagctgcttttaatatgagaggttcatttgcaattcttaattttcc |
32986435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 39360347 - 39360444
Alignment:
| Q |
170 |
ccatggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagctt |
269 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| | ||| | |||| ||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
39360347 |
ccatggggaaaatgggctgcagagattcgtgatcca---agaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagctt |
39360443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 30641793 - 30641852
Alignment:
| Q |
227 |
tggcttggtacatttaacactgctgaggaagctgcaagagcttatgatcgtgctgctttt |
286 |
Q |
| |
|
|||||||| |||||| | |||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
30641793 |
tggcttggaacatttgatactgctgaacaagctgcaagagcttatgatgctgctgctttt |
30641852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 40444726 - 40444680
Alignment:
| Q |
152 |
agaggagtaaggataaggccatggggaaaatgtgcagcagagattcg |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||| ||||| |
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|
| T |
40444726 |
agaggagtaaggagaaggccatggggaaaatatgctgcagaaattcg |
40444680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 35547999 - 35548077
Alignment:
| Q |
254 |
gaagctgcaagagcttatgatcgtgctgcttttgaaatgagaggttcttcagctattcttaactttcctcatgaacatt |
332 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || || |||||||||||||||||||| | ||||| |||||||||| |
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|
| T |
35547999 |
gaagctgcaagagcttatgactgtgctgctttcgatattagaggttcttcagctattctaatttttccacatgaacatt |
35548077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 8111500 - 8111468
Alignment:
| Q |
242 |
aacactgctgaggaagctgcaagagcttatgat |
274 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
8111500 |
aacactgctgaagaagctgcaagagcttatgat |
8111468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 300
Target Start/End: Original strand, 4417861 - 4417988
Alignment:
| Q |
173 |
tggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagcttatg |
272 |
Q |
| |
|
||||| |||| ||| || |||||||| || |||||| | ||||||||| |||| |||||||| ||||| | || ||||| |||||||| | ||||||| |
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|
| T |
4417861 |
tgggggaaatatgcggcggagattcgtgactcggctcgtcatggagctagagtatggcttggaacattccaaacagctgaagaagctgctatggcttatg |
4417960 |
T |
|
| Q |
273 |
atcgtgctgcttttgaaatgagaggttc |
300 |
Q |
| |
|
|| | |||||||| ||||||||||||| |
|
|
| T |
4417961 |
atagagctgctttcaaaatgagaggttc |
4417988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 4420279 - 4420224
Alignment:
| Q |
149 |
tatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattc |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| || ||| ||||||| |
|
|
| T |
4420279 |
tatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattc |
4420224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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