View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_low_12 (Length: 327)
Name: NF12205_low_12
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 46932974 - 46933276
Alignment:
| Q |
18 |
tcagttcacacccccctgactctttatctttctgtataatagtactctctaatattactactgcaatgtttcagcggctgacatggtgacagtacctata |
117 |
Q |
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| T |
46932974 |
tcagttcacacccccctgactctttatctttctgtataatagtactctctaatattactactgcaatgtttcagcggctgacatggtgacagtacctata |
46933073 |
T |
|
| Q |
118 |
gtcctttatatttttctgattcatctgtgagtattactagtctcgtgaatccnnnnnnnnnnnnnnctgttctaaaacacttatttattaccactacctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46933074 |
gtcctttatatttttctgattcatctgtgagtattactagtctcgtgaatccttttttgtttttttctgttctaaaacacttatttattaccactacctt |
46933173 |
T |
|
| Q |
218 |
attcccttgttcatgttacgtgcatatttatgggaattgtatacannnnnnnnnnnnnnnatcttaatttaacaacaagacgaactaacccctctctgtg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46933174 |
attcccttgttcatgttacgtgcatatttatgggaattgtatacattttttaatttttttatcttaatttaacaacaagacgaactaacccctctctgtg |
46933273 |
T |
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| Q |
318 |
ctc |
320 |
Q |
| |
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||| |
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| T |
46933274 |
ctc |
46933276 |
T |
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