View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_low_13 (Length: 318)
Name: NF12205_low_13
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3573624 - 3573318
Alignment:
| Q |
1 |
ccatgccgtccgttttcttctctgacgatctcctcactagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573624 |
ccatgccgtccgttttcttctctgacgatctcctcactagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttgg |
3573525 |
T |
|
| Q |
101 |
aacactctcattt---atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaa |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573524 |
aacactctcatttccgatcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaa |
3573425 |
T |
|
| Q |
198 |
tcaaaggagttgaccctgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573424 |
tcaaaggagttgaccctgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttac |
3573325 |
T |
|
| Q |
298 |
ccttgtc |
304 |
Q |
| |
|
||||||| |
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| T |
3573324 |
ccttgtc |
3573318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 297
Target Start/End: Original strand, 3564858 - 3565108
Alignment:
| Q |
50 |
ttacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt---atcccaatttcatgaaattctatctcaagaaat |
146 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||| |
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| T |
3564858 |
ttacttcctgtaaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccatctcatgaaat |
3564957 |
T |
|
| Q |
147 |
caaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgaggaagatta |
246 |
Q |
| |
|
||||||||||||||| | | |||| |||||| || | ||| |||| ||||| ||| | |||| | ||||| |||||| |||| ||||| |
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| T |
3564958 |
caaaatcacaaaatcaatacttcacactaataactcatcacctaaaaattatcaagggaaattccccttatggtagtgacgatgaagctgagattgatta |
3565057 |
T |
|
| Q |
247 |
cagtatcattccatatcctatatctcgtttacttgataacccttcgtttac |
297 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| || ||||| |
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| T |
3565058 |
cagtatcattccatatcctatacctcgtttactcgataacccgtcatttac |
3565108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 1687304 - 1687154
Alignment:
| Q |
15 |
ttcttctctgacgatctcctca-ctagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt |
113 |
Q |
| |
|
||||||||||| ||||||||| | || |||||||||||||| |||||||||| || ||||| |||| ||| |||||||| |||||||| |||| |||| |
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|
| T |
1687304 |
ttcttctctgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttggaacgctctaattt |
1687205 |
T |
|
| Q |
114 |
---atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatc |
161 |
Q |
| |
|
||||| ||| |||||||| ||||||||| ||||||||||||||||| |
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|
| T |
1687204 |
ctgatcccttttttgtgaaattccatctcaagagatcaaaatcacaaaatc |
1687154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 3556832 - 3556954
Alignment:
| Q |
42 |
tcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt---atcccaatttcatgaaattctatct |
138 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| || | ||| |||||||| |||||||| |||| |||| |||||||||| |||||||| |||| |
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| T |
3556832 |
tcctttcattactttctgtgaaatctctacttcgatttagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattccatct |
3556931 |
T |
|
| Q |
139 |
caagaaatcaaaatcacaaaatc |
161 |
Q |
| |
|
||||| ||||||||||||||||| |
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|
| T |
3556932 |
caagagatcaaaatcacaaaatc |
3556954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 1687034 - 1686973
Alignment:
| Q |
242 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgt |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| ||||||| ||| |||||||||| |
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|
| T |
1687034 |
gattacagtttcattccatatcctatatcttgtttactcgataacctgtcgattacccttgt |
1686973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 3557035 - 3557107
Alignment:
| Q |
242 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtctctgctcctc |
314 |
Q |
| |
|
|||||| ||||||||||||| |||||| | |||||||| |||||||| || ||||||||| || ||| ||||| |
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| T |
3557035 |
gattacggtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctc |
3557107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 39380014 - 39379862
Alignment:
| Q |
18 |
ttctctgacgatctcctcact-agttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt--- |
113 |
Q |
| |
|
||||| |||||||| ||||| || ||||||| ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
39380014 |
ttctccgacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccg |
39379915 |
T |
|
| Q |
114 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaa |
166 |
Q |
| |
|
|||||||||| | ||||| | ||||||||| |||||||| |||||||||| |
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|
| T |
39379914 |
atcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaa |
39379862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 39379828 - 39379767
Alignment:
| Q |
242 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgt |
303 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |
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|
| T |
39379828 |
gattacagtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgt |
39379767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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