View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_low_15 (Length: 253)
Name: NF12205_low_15
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 38809518 - 38809734
Alignment:
| Q |
19 |
ttaagtgcattttttgaagctcaatataaaaggccttgtaaattatgctaatgacattattcttacacaaataatggaagatgagttaaaggaaaaggtg |
118 |
Q |
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| T |
38809518 |
ttaagtgcattttttgaagctcaatataaaaggccttgtaaattatgctaatgacattattcttacacaaataatggaagatgagttaaaggaaaaggtg |
38809617 |
T |
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| Q |
119 |
aaacaagatgaattaccaaagaaaatcaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggag |
218 |
Q |
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| T |
38809618 |
aaacaagatgaattaccaaagaaaataaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggag |
38809717 |
T |
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| Q |
219 |
ctcgagtttggcttggt |
235 |
Q |
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| T |
38809718 |
ctcgagtttggcttggt |
38809734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 38822575 - 38822683
Alignment:
| Q |
127 |
tgaattaccaaagaaaatcaagtatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtt |
226 |
Q |
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| T |
38822575 |
tgaattaccaaagcaaattaagtatagaggagtgaggataaggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtt |
38822674 |
T |
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| Q |
227 |
tggcttggt |
235 |
Q |
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| T |
38822675 |
tggcttggt |
38822683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 38811678 - 38811802
Alignment:
| Q |
112 |
aaaggtgaaacaagatgaattaccaaagaaaatcaagtatagaggagtaaggataaggccatggggaaaatgtgcagcaga-gattcgagattcggctag |
210 |
Q |
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| T |
38811678 |
aaaggtgaatgaagaggaattaacaatgcaaatcaagtatagaggagaaaggatccggccatggccaaaatttcccccctaagattagagattcggctag |
38811777 |
T |
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| Q |
211 |
acatggagctcgagtttggcttggt |
235 |
Q |
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||||| |||||||||||||||||| |
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| T |
38811778 |
gcatggtgctcgagtttggcttggt |
38811802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 4420279 - 4420224
Alignment:
| Q |
149 |
tatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattc |
204 |
Q |
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| T |
4420279 |
tatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattc |
4420224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 40444726 - 40444680
Alignment:
| Q |
152 |
agaggagtaaggataaggccatggggaaaatgtgcagcagagattcg |
198 |
Q |
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| T |
40444726 |
agaggagtaaggagaaggccatggggaaaatatgctgcagaaattcg |
40444680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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