View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12205_low_17 (Length: 242)

Name: NF12205_low_17
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12205_low_17
NF12205_low_17
[»] chr2 (8 HSPs)
chr2 (106-242)||(43429377-43429513)
chr2 (97-226)||(402743-402875)
chr2 (26-69)||(18959118-18959161)
chr2 (26-69)||(3481361-3481404)
chr2 (29-71)||(10516784-10516826)
chr2 (26-67)||(887097-887138)
chr2 (26-71)||(31959726-31959771)
chr2 (27-71)||(34931637-34931681)
[»] chr3 (7 HSPs)
chr3 (26-69)||(49841823-49841866)
chr3 (26-66)||(45374509-45374549)
chr3 (32-71)||(45486887-45486926)
chr3 (33-71)||(54128584-54128622)
chr3 (26-71)||(40991636-40991681)
chr3 (26-71)||(46148233-46148278)
chr3 (26-71)||(48734179-48734224)
[»] chr5 (8 HSPs)
chr5 (29-71)||(6889198-6889240)
chr5 (25-71)||(9235252-9235298)
chr5 (26-71)||(6859586-6859631)
chr5 (26-71)||(418066-418111)
chr5 (26-71)||(5558346-5558391)
chr5 (26-71)||(11675735-11675780)
chr5 (26-71)||(18855812-18855857)
chr5 (26-71)||(41833689-41833734)
[»] chr8 (8 HSPs)
chr8 (26-71)||(35914633-35914678)
chr8 (26-70)||(27556334-27556378)
chr8 (26-69)||(32931167-32931210)
chr8 (26-71)||(490540-490585)
chr8 (26-67)||(2518430-2518471)
chr8 (26-71)||(21425251-21425296)
chr8 (26-70)||(1313770-1313814)
chr8 (27-71)||(43904698-43904742)
[»] chr6 (3 HSPs)
chr6 (26-71)||(34537-34582)
chr6 (26-71)||(7337227-7337272)
chr6 (26-71)||(8364761-8364806)
[»] chr1 (11 HSPs)
chr1 (32-69)||(8676900-8676937)
chr1 (26-71)||(8796414-8796459)
chr1 (26-71)||(37294140-37294185)
chr1 (27-71)||(25715359-25715403)
chr1 (26-71)||(1290063-1290108)
chr1 (26-71)||(2544798-2544843)
chr1 (26-71)||(17269021-17269066)
chr1 (26-71)||(28090726-28090771)
chr1 (27-71)||(9599427-9599471)
chr1 (27-71)||(27072520-27072564)
chr1 (26-70)||(41560435-41560479)
[»] chr7 (5 HSPs)
chr7 (26-70)||(38135245-38135289)
chr7 (26-71)||(9210736-9210781)
chr7 (26-71)||(27893595-27893640)
chr7 (26-71)||(45054335-45054380)
chr7 (32-72)||(36239834-36239874)
[»] chr4 (5 HSPs)
chr4 (32-71)||(12443300-12443339)
chr4 (26-71)||(29399009-29399054)
chr4 (26-71)||(35690476-35690521)
chr4 (26-71)||(45209237-45209282)
chr4 (27-71)||(51176779-51176823)
[»] scaffold0245 (1 HSPs)
scaffold0245 (26-71)||(16468-16513)
[»] scaffold0024 (1 HSPs)
scaffold0024 (32-69)||(48154-48191)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 43429377 - 43429513
Alignment:
Q  106 aattgtttctttccctgcatgaaaactacaagaaacctgaaaatgaaaagaaaatttcaaaaccttttgatgattcttgaaatctgattccgatcaagat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||    
T  43429377 aattgtttctttccctgcatgaaaactacaagaaacctgaaaatgaaaagaaaatttcagaaccttttgattattcttgaaatctgattccgatcatgat 43429476  T
Q  206 taccaatatctccaagaacttcacggatgcgtttttt 242  Q
    |||||||||||| ||||||||||||||||||||||||    
T  43429477 taccaatatctcgaagaacttcacggatgcgtttttt 43429513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 402743 - 402875
Alignment:
Q  97 agcttggttaattgtttctttccctgcatgaaa---actacaagaaacctgaaaatgaaaagaaaatttcaaaaccttttgatgattcttgaaatctgat 193  Q
    |||||||||||||||||||||||||||| ||||   |||||||||||| |||    |||||||||||| || |||||| |||||  || ||||||||| |    
T  402743 agcttggttaattgtttctttccctgcaagaaaagtactacaagaaacttgattgcgaaaagaaaattacagaaccttgtgatgggtcgtgaaatctggt 402842  T
Q  194 tccgatcaagattaccaatatctccaagaactt 226  Q
    |||  |||||||||||  ||||||||| |||||    
T  402843 tcccctcaagattaccgctatctccaataactt 402875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 18959161 - 18959118
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcata 69  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  18959161 gggtcagctacatggatcaaattatgccataatgttctatcata 18959118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 3481404 - 3481361
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcata 69  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||    
T  3481404 gggtcagctacatggatcaaattacgccataatgttctatcata 3481361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 10516784 - 10516826
Alignment:
Q  29 tcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||||||||||||| |||||| ||||||||||| |||||||||    
T  10516784 tcagctacatggatcaaattacgccataatattttatcataaa 10516826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 887097 - 887138
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatca 67  Q
    ||||||||||||||||| |||||| |||||||| ||||||||    
T  887097 gggtcagctacatggatcaaattacgccataatgttctatca 887138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 31959771 - 31959726
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  31959771 gggtctgctacatggatcaaattatgccatagtgttctatcataaa 31959726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 34931681 - 34931637
Alignment:
Q  27 ggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||| |||| |||||| ||||||||||||||| ||||||||||||    
T  34931681 ggtcggctatatggatcaaattatgccataatgttctatcataaa 34931637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 49841866 - 49841823
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcata 69  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  49841866 gggtcagctacatggatcaaattatgccataatgttctatcata 49841823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 45374509 - 45374549
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatc 66  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  45374509 gggtcagctacatggattaaattacgccataatgttctatc 45374549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 45486887 - 45486926
Alignment:
Q  32 gctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  45486887 gctacatggatcaaattatgccataatgttctatcataaa 45486926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 54128622 - 54128584
Alignment:
Q  33 ctacatggattaaattatgccataatattctatcataaa 71  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  54128622 ctacatggatcaaattatgccataatgttctatcataaa 54128584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 40991681 - 40991636
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  40991681 gggtcagctacatggatcaaattacaccataatgttctatcataaa 40991636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 46148278 - 46148233
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  46148278 gggtcggctacatggatcaaattacgccataatgttctatcataaa 46148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 48734179 - 48734224
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||| || ||| |||||||| ||||||||||||    
T  48734179 gggtcagctacatggatcaacttacgccataatgttctatcataaa 48734224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 6889240 - 6889198
Alignment:
Q  29 tcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  6889240 tcagctacatggattaaattacgccataatgttctatcataaa 6889198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 9235298 - 9235252
Alignment:
Q  25 tgggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  9235298 tgggtcggctacatggatcaaattatgccataatgttctatcataaa 9235252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 6859631 - 6859586
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||    
T  6859631 gggtcagcaacatggataaaattatgccataatgttctatcataaa 6859586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 418066 - 418111
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  418066 gggtcggctacatggatcaaattacgccataatgttctatcataaa 418111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 5558391 - 5558346
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  5558391 gggtcggctacatggatcaaattatgccatagtgttctatcataaa 5558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 11675780 - 11675735
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||||||| || |||||||| ||||||||||||    
T  11675780 gggtcggctacatggattaaactacgccataatgttctatcataaa 11675735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 18855857 - 18855812
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||||||    
T  18855857 gggtcggctacatggatcaaattatgctataatgttctatcataaa 18855812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 41833689 - 41833734
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||||||    
T  41833689 gggtcagctacatggattaaattacaccaaaatgttctatcataaa 41833734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 35914633 - 35914678
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  35914633 gggtcagctacatggatcaaattacgccataatgttctatcataaa 35914678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 27556334 - 27556378
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataa 70  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  27556334 gggtcggctacatggatcaaattatgccataatgttctatcataa 27556378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 32931210 - 32931167
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcata 69  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||    
T  32931210 gggtcggctacatggatcaaattatgccataatgttctatcata 32931167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 490585 - 490540
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  490585 gggtcggctacatggatcaaattacgccataatgttctatcataaa 490540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 2518430 - 2518471
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatca 67  Q
    |||||||||||| |||| ||||||||||||||| ||||||||    
T  2518430 gggtcagctacaaggatcaaattatgccataatgttctatca 2518471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 21425296 - 21425251
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||||||||||||  |||||||||||    
T  21425296 gggtctgctacatggatcaaattatgccataatggtctatcataaa 21425251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 1313814 - 1313770
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataa 70  Q
    |||||| |||||||||| |||||| |||||||| |||||||||||    
T  1313814 gggtcaactacatggataaaattacgccataatgttctatcataa 1313770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 43904698 - 43904742
Alignment:
Q  27 ggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  43904698 ggtcggctacatggatcaaattacgccataatgttctatcataaa 43904742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 34537 - 34582
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  34537 gggtcagctacatggatcaaattacgccataatgttctatcataaa 34582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 7337227 - 7337272
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||    
T  7337227 gggtcggctacatggaccaaattacgccataatattctatcataaa 7337272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 8364806 - 8364761
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  8364806 gggtcggctacatggatcaaattacgccataatgttctatcataaa 8364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 8676900 - 8676937
Alignment:
Q  32 gctacatggattaaattatgccataatattctatcata 69  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8676900 gctacatggatcaaattatgccataatattctatcata 8676937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 8796459 - 8796414
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||    
T  8796459 gggtcggctacatggattaaattacgccataatgttctatcataaa 8796414  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 37294140 - 37294185
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  37294140 gggtcagctacatggatcaaattacgccataatgttctatcataaa 37294185  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 25715359 - 25715403
Alignment:
Q  27 ggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||    
T  25715359 ggtcggctacatggatcaaattacgccataatattctatcataaa 25715403  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 1290063 - 1290108
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| || |||||||| ||||||||||||||| ||||||||||||    
T  1290063 gggtcggccacatggatcaaattatgccataatgttctatcataaa 1290108  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 2544843 - 2544798
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  2544843 gggtcggctacatggatcaaattatgccataatgttctattataaa 2544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 17269021 - 17269066
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  17269021 gggtcggctacatggatcaaattacgccataatgttctatcataaa 17269066  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 28090726 - 28090771
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  28090726 gggtcggctacatggatcaaattacgccataatgttctatcataaa 28090771  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 9599427 - 9599471
Alignment:
Q  27 ggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||    
T  9599427 ggtcagctacatggatcaaattacgccataacgttctatcataaa 9599471  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 27072520 - 27072564
Alignment:
Q  27 ggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  27072520 ggtcggctacatggatcaaattacgccataatgttctatcataaa 27072564  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 41560479 - 41560435
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataa 70  Q
    ||||| ||||||||||| |||||| |||||||| |||||||||||    
T  41560479 gggtcggctacatggatcaaattacgccataatgttctatcataa 41560435  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 38135245 - 38135289
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataa 70  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||    
T  38135245 gggtcagctagatggatcaaattacgccataatattctatcataa 38135289  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 9210736 - 9210781
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||||||||| |||||| |||||||| || |||||||||    
T  9210736 gggtcagctacatggatcaaattacgccataatgttgtatcataaa 9210781  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 27893595 - 27893640
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| |||||||| || ||||||||||||||| ||||||||||||    
T  27893595 gggtcggctacatgaatcaaattatgccataatgttctatcataaa 27893640  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 45054335 - 45054380
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||    
T  45054335 gggtcggctacatggaccaaattacgccataatattctatcataaa 45054380  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 36239834 - 36239874
Alignment:
Q  32 gctacatggattaaattatgccataatattctatcataaag 72  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  36239834 gctacatggatcaaattacgccataatgttctatcataaag 36239874  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 12443339 - 12443300
Alignment:
Q  32 gctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  12443339 gctacatggatcaaattatgccataatgttctatcataaa 12443300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 29399054 - 29399009
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||||||||||||| || |||||| |||||||| ||||||||||||    
T  29399054 gggtcagctacatgaatcaaattacgccataatgttctatcataaa 29399009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 35690521 - 35690476
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  35690521 gggtcggctacatggatcaaattacgccataatgttctatcataaa 35690476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 45209237 - 45209282
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| ||||||||||| ||| || |||||||||||||||||||||    
T  45209237 gggtcggctacatggatcaaactacgccataatattctatcataaa 45209282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 51176823 - 51176779
Alignment:
Q  27 ggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    |||| ||||||||||| ||||||||||||||| ||||||| ||||    
T  51176823 ggtccgctacatggatcaaattatgccataatgttctatcctaaa 51176779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 16468 - 16513
Alignment:
Q  26 gggtcagctacatggattaaattatgccataatattctatcataaa 71  Q
    ||||| || |||||||| ||||||||||||||| ||||||||||||    
T  16468 gggtcggccacatggatcaaattatgccataatgttctatcataaa 16513  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 48154 - 48191
Alignment:
Q  32 gctacatggattaaattatgccataatattctatcata 69  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  48154 gctacatggatcaaattacgccataatattctatcata 48191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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