View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_low_18 (Length: 237)
Name: NF12205_low_18
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 51253154 - 51253079
Alignment:
| Q |
26 |
gaaaagaagcgttattgtagctgctagacagttgtttttatgagaagagcattgtacccagaaaatggtgagaacc |
101 |
Q |
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| T |
51253154 |
gaaaagaagcgttattgtagctgctagacagttgtttttatgagaagagcattgtacccagaaaatggtgacaacc |
51253079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 51252942 - 51252877
Alignment:
| Q |
172 |
agatggtagaaaagagatgaacactcacaacttgttggaaaccagagaggtaaatggcaagagagc |
237 |
Q |
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| T |
51252942 |
agatggtagaaaagagatgaacactcacaacttgttggaaaccagagaggtaaatggcaagagagc |
51252877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 144
Target Start/End: Complemental strand, 51253026 - 51252995
Alignment:
| Q |
113 |
ataaaatataatcatatatgttggtgtcggaa |
144 |
Q |
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| T |
51253026 |
ataaaatataatcatatatgttggtgtcggaa |
51252995 |
T |
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