View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12205_low_19 (Length: 233)

Name: NF12205_low_19
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12205_low_19
NF12205_low_19
[»] chr1 (3 HSPs)
chr1 (18-223)||(10153051-10153268)
chr1 (19-75)||(13619491-13619548)
chr1 (19-75)||(52041185-52041242)
[»] chr4 (1 HSPs)
chr4 (85-209)||(12384285-12384409)
[»] chr8 (1 HSPs)
chr8 (93-209)||(22450409-22450525)
[»] chr3 (1 HSPs)
chr3 (94-193)||(20905499-20905598)
[»] chr7 (4 HSPs)
chr7 (128-209)||(11917618-11917699)
chr7 (95-143)||(23222230-23222278)
chr7 (18-87)||(11918728-11918798)
chr7 (87-133)||(11918640-11918686)
[»] chr5 (1 HSPs)
chr5 (96-174)||(24185946-24186024)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 10153051 - 10153268
Alignment:
Q  18 cagaaactactatatgtcctctttcaaacaccattgttccactcgtaaaggagtttcctaacttaag------------atagaatagtcatctgcataa 105  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||             | |||||||||||||||||||    
T  10153051 cagaaactactatatgtcctctttcgaacacaattgatccactcgtaaaggagtttcctaacttaaagaaatttataaaacagaatagtcatctgcataa 10153150  T
Q  106 tatcacaaaacaatgcacaagtaatattaaactacaaattttttcagtaatatactactatatcttagctttcaaacccaactgggttcactaaaaaata 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10153151 tatcacaaaacaatacacaagtaatattaaactacaaattttttcagtaatatactactatatcttagctttcaaacccaactgggttcactaaaaaata 10153250  T
Q  206 agttgtttaacacaggtt 223  Q
    || |||||||||||||||    
T  10153251 agctgtttaacacaggtt 10153268  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 13619548 - 13619491
Alignment:
Q  19 agaaactactatatgtcctctttcaaacaccattgttcc-actcgtaaaggagtttcc 75  Q
    |||||||||||||||||||||||||||| | | || ||| ||||| ||||||||||||    
T  13619548 agaaactactatatgtcctctttcaaacgcaactggtcctactcgaaaaggagtttcc 13619491  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 52041185 - 52041242
Alignment:
Q  19 agaaactactatatgtcctctttcaaacaccattgttcc-actcgtaaaggagtttcc 75  Q
    |||||||||||||||||||||||||||| | | || ||| ||||| ||||||||||||    
T  52041185 agaaactactatatgtcctctttcaaacgcaactggtcctactcgaaaaggagtttcc 52041242  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 12384409 - 12384285
Alignment:
Q  85 atagaatagtcatctgcataatatcacaaaacaatgcacaagtaatattaaactacaaattttttcagtaatatactactatatcttagctttcaaaccc 184  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||   |||||||||||||| |||||||||||||| |||||||||    
T  12384409 atagaattgtcatcttcataatatcacaaaacaatgtacaagtaatattaaaccacaagacttttcagtaatataatactatatcttagcgttcaaaccc 12384310  T
Q  185 aactgggttcactaaaaaataagtt 209  Q
    |||||| ||||||||||||||||||    
T  12384309 aactggattcactaaaaaataagtt 12384285  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 22450525 - 22450409
Alignment:
Q  93 gtcatctgcataatatcacaaaacaatgcacaagtaatattaaactacaaattttttcagtaatatactactatatcttagctttcaaacccaactgggt 192  Q
    ||||||| ||||||||| ||||| | |||||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||||||||  ||||||||    
T  22450525 gtcatcttcataatatcgcaaaatagtgcacaagtaatattaaactacaaaactttccagtaatatactactatattttagctttcaaactaaactgggt 22450426  T
Q  193 tcactaaaaaataagtt 209  Q
    ||||| |||||||||||    
T  22450425 tcactcaaaaataagtt 22450409  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 20905499 - 20905598
Alignment:
Q  94 tcatctgcataatatcacaaaacaatgcacaagtaatattaaactacaaattttttcagtaatatactactatatcttagctttcaaacccaactgggtt 193  Q
    |||||| | |||||||||| |||| |||||||||||||||||||||||||  |||  |||||||||| || |||||||| |||| |||||||||||||||    
T  20905499 tcatcttcgtaatatcacataacagtgcacaagtaatattaaactacaaaactttctagtaatataccaccatatcttaacttttaaacccaactgggtt 20905598  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 11917699 - 11917618
Alignment:
Q  128 aatattaaactacaaattttttcagtaatatactactatatcttagctttcaaacccaactgggttcactaaaaaataagtt 209  Q
    ||||||||||||||||  ||| ||||||||||||||||||| ||| |||||| ||  || |||||||||| ||||| |||||    
T  11917699 aatattaaactacaaaactttccagtaatatactactatattttaactttcatacataattgggttcactcaaaaagaagtt 11917618  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 23222278 - 23222230
Alignment:
Q  95 catctgcataatatcacaaaacaatgcacaagtaatattaaactacaaa 143  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  23222278 catcttcataatatcacaaaatagtgcacaagtaatattaaactacaaa 23222230  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 11918798 - 11918728
Alignment:
Q  18 cagaaactactatatgtcctctttcaaacacca-ttgttccactcgtaaaggagtttcctaacttaagata 87  Q
    ||||||||| ||||||||||||||||||||| | | || ||||||| |||||| ||| |||||||||||||    
T  11918798 cagaaactaatatatgtcctctttcaaacacaactggtcccactcgaaaaggaattttctaacttaagata 11918728  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 11918686 - 11918640
Alignment:
Q  87 agaatagtcatctgcataatatcacaaaacaatgcacaagtaatatt 133  Q
    |||| |||||||| |||||||||| ||||||||||||||||| ||||    
T  11918686 agaacagtcatctacataatatcagaaaacaatgcacaagtagtatt 11918640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 24185946 - 24186024
Alignment:
Q  96 atctgcataatatcacaaaacaatgcacaagtaatattaaactacaaattttttcagtaatatactactatatcttagc 174  Q
    |||| |||||||||||||||   |||||||||| || ||||||||||| ||||  || |||||| ||||||||||||||    
T  24185946 atcttcataatatcacaaaattgtgcacaagtactactaaactacaaaattttgtagaaatataatactatatcttagc 24186024  T

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