View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12205_low_2 (Length: 519)
Name: NF12205_low_2
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 37136411 - 37135928
Alignment:
| Q |
18 |
tgtaagcaaagaaaagaacagccgaggctttaaaaacacctctggtaccaaaaggagcaaatgaagcgtaattttcggggttggcgttgattaggccaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37136411 |
tgtaagcaaagaaaagaacagccgaggctttaaaaacacctctggtaccaaaaggagcaaatgaagcgtagttttcggggttggcgttgattaggccaac |
37136312 |
T |
|
| Q |
118 |
aatgatgatgaaggcaatgacaactaaatgaaagatagttgcaattttgttgaagagagaagagattctggtgctcaagactgcaagagtggcgatggct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136311 |
aatgatgatgaaggcaatgacaactaaatgaaagattgttgcaattttgttgaagagagaagagattctggtgctcaagactgcaagagtggcgatggct |
37136212 |
T |
|
| Q |
218 |
atgagggctataacagcaatagggtcaagatgaccataatcagggctcatattttggactattatacgaaaatcgttaggatttttgttgcagagggtgg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136211 |
atgagggctataacagcaatagggtcaagatgaccataatcagggttcatattgtggaatattatacgaaaatcgttaggatttttgttgcagagggtgg |
37136112 |
T |
|
| Q |
318 |
caaaataggaggtccatgatcgagctacggctgctgctcctataacatattcaaggagtatgtttccagcagctatgaaggccacaaagtctcccaattc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136111 |
caaaataggaggtccatgatcgagctacggctgctgctcctataacatattcaaggagtatgtttccagcagctatgaaggccacaaagtctcccaattc |
37136012 |
T |
|
| Q |
418 |
tactcttaagtatgcaaatgacccacctgataacaaacaataacacccacataactcaattagtgtcaaatttcaatttattaa |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
37136011 |
tactcttaagtatgcaaatgacccacctgataacaaacaataacacccacataactcaattagtgtcaagtttaaatttattaa |
37135928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 197 - 447
Target Start/End: Original strand, 37120021 - 37120271
Alignment:
| Q |
197 |
actgcaagagtggcgatggctatgagggctataacagcaatagggtcaagatgaccataatcagggctcatattttggactattatacgaaaatcgttag |
296 |
Q |
| |
|
|||||||||| | |||||||| |||||| || |||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||| | || |
|
|
| T |
37120021 |
actgcaagagctgtgatggctactagggctccaatagcaatagggtcaagatggccataatcaggattcatattgtgaactattatacgaaaatcatcag |
37120120 |
T |
|
| Q |
297 |
gatttttgttgcagagggtggcaaaataggaggtccatgatcgagctacggctgctgctcctataacatattcaaggagtatgtttccagcagctatgaa |
396 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| || || || || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
37120121 |
ggtttttgttgcagagggtggcaaaataggaggtccatgatcgagctaccgccgcgttgccaatgacatattcaaggaggatgtttccggcagctatgaa |
37120220 |
T |
|
| Q |
397 |
ggccacaaagtctcccaattctactcttaagtatgcaaatgacccacctga |
447 |
Q |
| |
|
||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
37120221 |
ggcaacaaaatctcccatttctactctcaagtaagcaaatgacccacctga |
37120271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 232 - 447
Target Start/End: Original strand, 37111801 - 37112016
Alignment:
| Q |
232 |
agcaatagggtcaagatgaccataatcagggctcatattttggactattatacgaaaatcgttaggatttttgttgcagagggtggcaaaataggaggtc |
331 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| ||||||| || ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37111801 |
agcaatagggtcaagatggccatagtcagggttcatattgtgaactattatacgaaaatcatcagggtttttgttgcagagggtggcaaaataggaggtc |
37111900 |
T |
|
| Q |
332 |
catgatcgagctacggctgctgctcctataacatattcaaggagtatgtttccagcagctatgaaggccacaaagtctcccaattctactcttaagtatg |
431 |
Q |
| |
|
|||||||||||||| || || ||||| | ||| |||| ||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
37111901 |
catgatcgagctaccgcggcgttgcctatgatatactcaaagaggatgtttccggcagctataaaggcaacaaaatctcccaattctactcttaagtaag |
37112000 |
T |
|
| Q |
432 |
caaatgacccacctga |
447 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37112001 |
caaatgacccacctga |
37112016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University