View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_low_6 (Length: 408)
Name: NF12205_low_6
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 36862937 - 36862547
Alignment:
| Q |
13 |
tgtgctctactatatgcgaaataatcatgcnnnnnnngttaacaatattcaataaaattggcgtgaatccatactcgaaatggagctagatttatgaact |
112 |
Q |
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| T |
36862937 |
tgtgctctactatatgcgaaataatcatgcaaaaaaagttaacaatattcaataaaattggcgtgaatccatactcgaaatggagctagatttatgaact |
36862838 |
T |
|
| Q |
113 |
aacttgctgtgcatcttttttaatgaggcgtgtgnnnnnnngttatcnnnnnnnnnnnntcagaagagaaatattttcttagaaaactatgataagctgc |
212 |
Q |
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| T |
36862837 |
aacttgctgtgcatcttttttaatgaggcgtgtgtttttttgttatcaaaaaacaaaaatcagaagagaaatattttcttagaaaactatgataagctgc |
36862738 |
T |
|
| Q |
213 |
atactttccctnnnnnnncctgaannnnnnnaatcatgacatcatagtgacacccaccataacattagaacaataaaaatagcatgataataatccattg |
312 |
Q |
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| T |
36862737 |
atactttccctaaaaaatc-tgaatttttttaatcatgacataatagtgacacccaccataacattagaacaataaaaatagcatgataataatccattg |
36862639 |
T |
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| Q |
313 |
agtgaatgcaataaaaataaaaccaatatagcagaaatgaagttccagtaggataaatgatgtgcacacaactcaggcacattacataattg |
404 |
Q |
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| T |
36862638 |
agtgaatgcaataaaaataaaaccaatatagcagaaatgaagttccagtaggataaatgatgtgcacacaactcaggcacattacataattg |
36862547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 37365639 - 37365729
Alignment:
| Q |
305 |
atccattgagtgaatgcaataaaaataaaaccaatatagcagaaatgaagttccagtaggataaatgatgtgcacacaactcaggcacatta |
396 |
Q |
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| T |
37365639 |
atccatcgaatgaatgcaataaaaataaatc-aatatcgcagaaaagaagtgacaataggatgaatgatgtgtacacaactcaggcatatta |
37365729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 35065442 - 35065410
Alignment:
| Q |
277 |
ttagaacaataaaaatagcatgataataatcca |
309 |
Q |
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| T |
35065442 |
ttagaacaataaaaatagcatgataataatcca |
35065410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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