View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12205_low_9 (Length: 337)
Name: NF12205_low_9
Description: NF12205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12205_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 40308481 - 40308799
Alignment:
| Q |
14 |
ctatcattgtagataataaccacaagtcaattatataacatagttatcacatataaagcaccaacacgacagtttcaaattattctcaccttactttcaa |
113 |
Q |
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| T |
40308481 |
ctatcattgtagataataaccacaagtcaattatataacatagttatcacatataaagcaccaacatgacagtttcaaattattctcaccttactttcaa |
40308580 |
T |
|
| Q |
114 |
attctggaataacacacaatacccctgctttttcaagagatgtgtgtttgtcctcttccgctgtatttgacacggcttgtaagcatgattggatacctaa |
213 |
Q |
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| T |
40308581 |
attctggaataacacacaatacccctgctttttcaagagatgtgtgtttgtcctcttccgctgtatttgacacggcttgtaagcatgattggatacctaa |
40308680 |
T |
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| Q |
214 |
agatatatactcaaccgtctctttgacaactgctgctgattttggcttattgatgcaaaattcatcaatgtattcataatatcgcttgtcagtgactatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40308681 |
agatatatactcaaccgtctctttgacaactgctgctgattttggcttattgatgcaaaattcatcaatgtattcataatatcgtttgtcagtgactatg |
40308780 |
T |
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| Q |
314 |
ttttcgtccctttgcttct |
332 |
Q |
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| T |
40308781 |
ttttcgtccttttggttct |
40308799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 14690197 - 14690157
Alignment:
| Q |
121 |
aataacacacaatacccctgctttttcaagagatgtgtgtt |
161 |
Q |
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| T |
14690197 |
aataacacacaatacgcctgttttttcaagagatgtatgtt |
14690157 |
T |
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