View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12206_low_1 (Length: 599)
Name: NF12206_low_1
Description: NF12206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12206_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 73 - 571
Target Start/End: Original strand, 46721294 - 46721801
Alignment:
| Q |
73 |
agtacaacagagagaagagtgaagcgtgaatgctaagtcaat----gatagagggatagccgt---aagtagtgtgtgcgtgatttttaagtaaactcag |
165 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46721294 |
agtacaacggagagaagagtgaagcgtgaatgctaagtcaatcaatgatagagggatagccgttataagtagtgtgtgcgtgatttttaagtaaactcag |
46721393 |
T |
|
| Q |
166 |
aaacctaataagataatcgatcttaagtcgtgcatgcatgcgtg--ttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggctt |
263 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46721394 |
aaacctaataagataatcgatattaagtcgtgcatgcatgcatgcgttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcct |
46721493 |
T |
|
| Q |
264 |
gcgttatttcaaagtccacacacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46721494 |
gcgttatttcaaagtccacacacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttca |
46721593 |
T |
|
| Q |
364 |
atttcatggtaattaagcaaattaacttctcgattcatgtttctttttcactctaaccttcattgcttcattgtatttgtatattcatatacatatataa |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46721594 |
atttcatggtaattaagcaaattaacttctcgattcatgtttctttttcactctaaccttcattgcttcattgtatttgtatattcatatacatatataa |
46721693 |
T |
|
| Q |
464 |
atataatgctttttggtttttcctgtttctatacaggctctccctcagcagcaaattgttaactatcccactttcaagcttgtccttgtaggtgatggag |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46721694 |
atataatgctttttggtttttcctgtttctatacaggctctccctcagcagcaaattgttaactatcccactttcaagcttgtccttgtaggtgatggag |
46721793 |
T |
|
| Q |
564 |
gaaccggt |
571 |
Q |
| |
|
|||||||| |
|
|
| T |
46721794 |
gaaccggt |
46721801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University