View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12207_high_1 (Length: 483)
Name: NF12207_high_1
Description: NF12207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12207_high_1 |
 | |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 41947166 - 41947645
Alignment:
| Q |
7 |
agaacctgtgatgaaacacctacaatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctttaccaacc |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41947166 |
agaaactgtgatgaaacacctacaatcaaagtgcttttttacaagcttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctttaccaacc |
41947265 |
T |
|
| Q |
107 |
acaaaaacaaacatgagctcattggttccctccaccaaacaactaa---ccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41947266 |
acaaaaacaaacatgagctcattggttcccttcaccaatcaactaattaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatga |
41947365 |
T |
|
| Q |
204 |
aatgcgaagccattcgaagatcaccaaaacattcacttccagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactact |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947366 |
aatgcgaagccattcgaagatcaccaaaccattcactttcagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactact |
41947465 |
T |
|
| Q |
304 |
ttctttgatttcaccaaccgaagacttgatgtatttcatattagaagctatcttatgcctttgcttcatgttttgataacttgagctacctttttgattg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41947466 |
ttctttgatttcaccaaccgaagacttgatgtatttcatattagaagctatcttatgcctttgtttcatgttttgataacttgagctacctttttgattg |
41947565 |
T |
|
| Q |
404 |
gagctatgcatccagaatagttcttcctttgtaccaaatacacgttatagcaatcaatcacaacttttatgcgaaaagat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41947566 |
gagctatgcatccagaatagttcttcctttgtaccaaatacatgttatagcaatcaatcacaacttttatgcgaaaagat |
41947645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 483
Target Start/End: Original strand, 49386383 - 49386862
Alignment:
| Q |
15 |
tgatgaaacacctacaatcaaagtgctttttt-acaagctcgttat-----caaaaacatgcttagaaagagttgtttttcctag---tcctttaccaac |
105 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||||||||||||||||||||| || |||| |||||| |
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| T |
49386383 |
tgatgaaacaccttcaatcaaagtgtttttttcacaagcttgatataaaaaaaaaaacatgcttagaaagagttgtttttccaagtcctcctataccaaa |
49386482 |
T |
|
| Q |
106 |
cacaaaaacaaacatgagctcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaa |
205 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |
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|
| T |
49386483 |
cacataaaccaacatgagcttattggttccctccaccaaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatgaat |
49386582 |
T |
|
| Q |
206 |
tgcgaagccattcgaagatcaccaaaacattcacttccagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactacttt |
305 |
Q |
| |
|
|| |||||||||||||| ||| ||||| |||| ||||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||||| |||| |
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|
| T |
49386583 |
tgtgaagccattcgaaggtcaacaaaattttcatttccagtagtccctttagaacttccttgtacattttcattcgtaaatttatagctcgcacttcttt |
49386682 |
T |
|
| Q |
306 |
ctttgatttcaccaaccgaagac-ttgatgtatttcatattagaagctatcttatgcctttgcttcat-gttttgataacttgagctacctttttgattg |
403 |
Q |
| |
|
|||||||||||||||||||| || || |||| |||||||| | |||| | |||||||||||| ||||| ||||||||||||||| |||||||||| |||| |
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|
| T |
49386683 |
ctttgatttcaccaaccgaatacttttatgtttttcatatcataagcaaccttatgcctttgtttcatggttttgataacttgaactaccttttttattg |
49386782 |
T |
|
| Q |
404 |
gagctatgcatccagaatagttcttcctttgtaccaaatacacgttatagcaatcaatcacaacttttatgcgaaaagat |
483 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| |||||| |||| | |||| |||||||||||| ||| ||||||||||||| |
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|
| T |
49386783 |
gagctatacatccataatagttctccctttataccaattacatgctataacaatcaatcacatcttctatgcgaaaagat |
49386862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 3221418 - 3221898
Alignment:
| Q |
7 |
agaacctgtgatgaaacacctacaatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---tacca |
103 |
Q |
| |
|
|||| ||||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
3221418 |
agaaactgtgatgaaacatcgacaatcaaagtgctttttcacaagcttgttatcaaaaacatgcttagaaagagttgtttttccaagtcctcccatacca |
3221517 |
T |
|
| Q |
104 |
accacaaaaacaaacatgagctcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatga |
203 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |
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|
| T |
3221518 |
accacagaaatcaacatgagctcatttgttccctccaccaaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatga |
3221617 |
T |
|
| Q |
204 |
aatgcgaagccattcgaagatcaccaaaacattcacttccagtagtccctttagagcttccttgtccattttcagtcgtaaacttatacctcgcactact |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||| ||| | ||||||||| ||| |||| || |
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|
| T |
3221618 |
aatgcgaagccattcgaagatcaccaaaactttcatttccagtagtccctctagagcttcctggtccattgtcaaccacaaacttatatctcacacttct |
3221717 |
T |
|
| Q |
304 |
ttctttgatttcaccaaccgaagacttgatgtatttcatattagaagctatcttatgcctttgcttcat-gttttgataacttgagctacctttttgatt |
402 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
3221718 |
ttctttgatttcaccaaccgaagtcttgatgtttttcatatcggaagcaatcttatgcctttgtttcatggttttgataacttgagctacctttttgatt |
3221817 |
T |
|
| Q |
403 |
ggagctatgcatccagaatagttcttcctttgtaccaaatacacgttatagcaatcaatcacaacttttatgcgaaaagat |
483 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||| ||| |||| |||||||| |
|
|
| T |
3221818 |
ggagctatgcatccagaatagttctccctttgtaccaaatacatgctataacaatcaatcacatcttctatgtgaaaagat |
3221898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 3201038 - 3200919
Alignment:
| Q |
101 |
ccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaa |
200 |
Q |
| |
|
||||| ||| |||| |||||||||||| |||||||| ||||||| || ||||||||||||||| |||| |||||||| ||||||||||||||||||| || |
|
|
| T |
3201038 |
ccaacaacagaaaccaacatgagctcactggttccccccaccaagcatctaaccaattcatcttttggggactcaaaccccacaacttgagtctcttgaa |
3200939 |
T |
|
| Q |
201 |
tgaaatgcgaagccattcga |
220 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
3200938 |
tgaaataaggagccattcga |
3200919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 3721713 - 3721519
Alignment:
| Q |
29 |
caatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagct |
125 |
Q |
| |
|
||||||||||| |||| || | || |||||||||||||||||||| ||||||||||||||| |||||| | || |||||| |||| | || ||| |
|
|
| T |
3721713 |
caatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctaccacagaaacccatgtgcgct |
3721614 |
T |
|
| Q |
126 |
cattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcga |
220 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||| | |||| |||||||| || |||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
3721613 |
cattggctccccccaccaaaagactaaccaattcatttgttggggactcaaacccaacaacttgagtctcttcaatgaaataaggagccattcga |
3721519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 230
Target Start/End: Original strand, 3303938 - 3304121
Alignment:
| Q |
53 |
tcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt-------taccaaccacaaaaacaaacatgagctcattggttccctccaccaaa |
145 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||| |||| ||| || |||||||| ||| |||||||| |
|
|
| T |
3303938 |
tcgttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctacca-ccacagaaaccaacgtgtgctcattgtctccacccaccaaa |
3304036 |
T |
|
| Q |
146 |
caactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatcaccaa |
230 |
Q |
| |
|
| || || |||||||| | |||| |||||||||||||||||||||||||||| |||||||| | |||||||||| | ||||||| |
|
|
| T |
3304037 |
cgacgaatcaattcatttgttggggactcaaatcccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaa |
3304121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 3310589 - 3310784
Alignment:
| Q |
28 |
acaatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagc |
124 |
Q |
| |
|
|||||||||||||| ||| ||| || ||||| |||||||| ||||| |||||| |||||||| |||||| | ||||| ||| ||| ||||| || |
|
|
| T |
3310589 |
acaatcaaagtgctctttcacatactggttattaaaaacatacttagcaagagtcgtttttccaagtcctcccatgccaacaacagaaatcaacatcagg |
3310688 |
T |
|
| Q |
125 |
tcattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcga |
220 |
Q |
| |
|
||| ||||||| ||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
3310689 |
tcactggttccggacaccaaataactaatcaattcatctcttggagactcaatccccacaacttgagtctcttcaatgaatagggaagccattcga |
3310784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 3198349 - 3198479
Alignment:
| Q |
56 |
ttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaactaa |
152 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| || |||||| | ||||| ||| |||| |||||| ||||| |||||||||||||||| | |||| |
|
|
| T |
3198349 |
ttatcaaaaacatacttagcaagagtcgttttaccgagtcctcccatgccaacaacagaaaccaacatgcgctcactggttccctccaccaagaatctaa |
3198448 |
T |
|
| Q |
153 |
ccaattcatctcttggtgactcaaatcccac |
183 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |
|
|
| T |
3198449 |
ccaattcatctcttggggactcaaaccccac |
3198479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 3322215 - 3322360
Alignment:
| Q |
55 |
gttatcaaaaacatgcttagaaagagttgtttttcctagtcctt---taccaaccacaaaaacaaacatgagctcattggttccctccaccaaacaacta |
151 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |||||| | || |||||| || ||||| |||||||||||||| | ||||||| ||| |
|
|
| T |
3322215 |
gttattaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctaccacagtaatcaacatccgctcattggttcccccaaccaaaccactt |
3322314 |
T |
|
| Q |
152 |
accaattcatctcttggtgactcaaatcccacaacttgagtctctt |
197 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
3322315 |
accaattcatctgttggatcctcaaaccccacaacttgagtctctt |
3322360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 3357335 - 3357539
Alignment:
| Q |
29 |
caatcaaagtgcttttttacaagctcgttatcaaaaacatgcttagaaagagttgtttttcctagtcct---ttaccaaccacaaaaacaaacatgagct |
125 |
Q |
| |
|
||||||||||| |||| || | |||||||||||| |||||||||| ||||||||||||||| |||||| | || | |||| |||| ||| | | | |
|
|
| T |
3357335 |
caatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatgcctagcacagaaaccaacgtccgtt |
3357434 |
T |
|
| Q |
126 |
cattggttccctccaccaaacaactaaccaattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatc |
225 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||| | |||| |||||||| || |||||||||||||||| |||||||| | |||||||||| | || |
|
|
| T |
3357435 |
cattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaatgaaataaggagccattcgagggtc |
3357534 |
T |
|
| Q |
226 |
accaa |
230 |
Q |
| |
|
||||| |
|
|
| T |
3357535 |
accaa |
3357539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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