View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12207_high_3 (Length: 388)
Name: NF12207_high_3
Description: NF12207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12207_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 36416000 - 36415638
Alignment:
| Q |
19 |
tggttcagatttctctttatgctgttgtgcaagaaagttttgatctttacaaagatatctctgatgggcttggggttgttttggataatttcttcaattt |
118 |
Q |
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| T |
36416000 |
tggttcagatttctctttatgctgttgtgcaagaaagttttgatctttacaaagatatctctgatgggcttggggttgttttggataatttcttcaattt |
36415901 |
T |
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| Q |
119 |
accactttcagcttgtgttactgcattcaatgcatgtgttaaatcatataaacaatttgatgagttatctgcattttattctttttgtttaaatattgga |
218 |
Q |
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| T |
36415900 |
accactttcagcttgtgttactgcattcaatgcatgtgttaaatcatataaacaatttgatgagttatctgcattttattcattttgtttaaatattgga |
36415801 |
T |
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| Q |
219 |
attggaaggtcctatgagtatccaagtgtgcaaaaagtttccgaagagcttatggagacattacaagctttcttgaaggatcaagcttcattccataata |
318 |
Q |
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| T |
36415800 |
attggaaggtcctatgagtatccaagtgtgcaaaaagtttccgaagagcttatggagacattacaagctttcttgaaggatcaagcttcattccataata |
36415701 |
T |
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| Q |
319 |
ctgcttcaaaacattttattctttctgcacnnnnnnnntctaatgcaggtttaagttcatctc |
381 |
Q |
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| T |
36415700 |
ctgcttcaaaacattttattctttctgcacaaaaaaaatctaatgcaggtttaagttcatctc |
36415638 |
T |
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