View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12207_high_4 (Length: 337)
Name: NF12207_high_4
Description: NF12207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12207_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 13334093 - 13333791
Alignment:
| Q |
13 |
acctgtggcaccggagaaaccaacaaggacatattcgggcagaatagccgcaaaatcaacagtataagatacagcagtttcctctatgacaggaccattt |
112 |
Q |
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| T |
13334093 |
acctgtggcaccggagaaaccaaccaggacatattcgggcagaatagccgcaaaatcaacagtataagatacagcagtttcctctatgacaggaccattt |
13333994 |
T |
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| Q |
113 |
agataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacgatcgattggccatagag |
212 |
Q |
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| T |
13333993 |
agataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacgatcgattggccatagag |
13333894 |
T |
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| Q |
213 |
cagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagttacctgcgatttgaggatcccattcatttctaaaactatcaaactcaac |
312 |
Q |
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| T |
13333893 |
cagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagttacctgcgatttgaggatcccattcatttctaaaactatcaaactcaac |
13333794 |
T |
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| Q |
313 |
cgc |
315 |
Q |
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||| |
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| T |
13333793 |
cgc |
13333791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 13308836 - 13308673
Alignment:
| Q |
102 |
caggaccatttagataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacgatcgat |
201 |
Q |
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|||||| |||| |||||||||| | || |||| | ||| ||||||| ||||||||||||| | ||||||||||||| ||||| ||| ||||||||| |
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| T |
13308836 |
caggactatttggataagttacaaatacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttccttgaggttgacgatcgat |
13308737 |
T |
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| Q |
202 |
tggccatagagcagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagtta |
265 |
Q |
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| T |
13308736 |
tggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagtta |
13308673 |
T |
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