View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12207_low_6 (Length: 218)
Name: NF12207_low_6
Description: NF12207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12207_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 3303996 - 3303807
Alignment:
| Q |
22 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
3303996 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccactttgattgccgctctttcataacag |
3303897 |
T |
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| Q |
122 |
tttctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattccacaggttctgc |
211 |
Q |
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| T |
3303896 |
tttctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattccaaagggtctgc |
3303807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 3322271 - 3322108
Alignment:
| Q |
22 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||| ||| ||||||||||||||||| |
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| T |
3322271 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttaataaccagttggtgaaagaccaatttaattatcgctctttcataacag |
3322172 |
T |
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| Q |
122 |
tttctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaa |
185 |
Q |
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| T |
3322171 |
tttctcaatcatacactataagggaattgttgacagaaatgataaagaagttttgcaaggacaa |
3322108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 3721631 - 3721761
Alignment:
| Q |
22 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacag |
121 |
Q |
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| T |
3721631 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataaccagttggtgaaaagccactttgattgctgctctttcataacag |
3721730 |
T |
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| Q |
122 |
tttctcaatcatacactatgagggagttgtt |
152 |
Q |
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|||||||||| |||||||||| ||||||||| |
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| T |
3721731 |
tttctcaatcctacactatgacggagttgtt |
3721761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 3357413 - 3357297
Alignment:
| Q |
26 |
taggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttc |
125 |
Q |
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| T |
3357413 |
taggcatgggaggactcggaaaaacaactcttgctaagcatgtctttgataacgagttggtgaaaagccactttgattgccgctctttcataacagtttc |
3357314 |
T |
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| Q |
126 |
tcaatcatacactatga |
142 |
Q |
| |
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|||||| || ||||||| |
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| T |
3357313 |
tcaatcctatactatga |
3357297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 3221522 - 3221360
Alignment:
| Q |
22 |
gtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacag |
121 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||| | | ||||||| || ||||||||||| | |||||| |||| |
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| T |
3221522 |
gtggttggtatgggaggacttggaaaaacaactctttctaagcatgtttttgataacaagcttgtgaaaaagcactttgattgtcgatgtttcatcacag |
3221423 |
T |
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| Q |
122 |
tttctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggaca |
184 |
Q |
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|||||||||| || ||||| ||||||||| | || ||| |||||||||| |||||||||| |
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| T |
3221422 |
tttctcaatcgtatgatatgaaggagttgttgattgatatggtaaagaagttttgcaaggaca |
3221360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 3201037 - 3201209
Alignment:
| Q |
28 |
ggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctc |
127 |
Q |
| |
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|||||||||||| |||| ||||| |||||||||| ||||||||| | ||| | | ||||||| | | ||||||||||||| |||| | |||||||||| |
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| T |
3201037 |
ggcatgggaggaatcgggaaaactactcttgctagccatgtttttcaaaaccaggttgtgaaaaactactttgattgtcgctatttcgtcacagtttctc |
3201136 |
T |
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| Q |
128 |
aatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattcc |
200 |
Q |
| |
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|||| |||||| |||||||| |||| | || ||| |||||||||| | || |||||| ||||| |||||||| |
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| T |
3201137 |
aatcctacactctgagggagatgttgattgatatggtaaagaagtttttcatggacaacaatgagcctattcc |
3201209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 173
Target Start/End: Complemental strand, 3198398 - 3198253
Alignment:
| Q |
28 |
ggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctc |
127 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||| || |||||||| ||| ||||||||||| | || ||| || ||||| |
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| T |
3198398 |
ggcatgggaggactcggtaaaacgactcttgctaagtatgtttttgataaacatgaggtgaaaaaccactttgattgtcggttttacatcttagcttctc |
3198299 |
T |
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| Q |
128 |
aatcatacactatgagggagttgtttacagaaatgataaagaagtt |
173 |
Q |
| |
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|||| |||||| || ||||||||| | || ||||||| |||||| |
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| T |
3198298 |
aatccaacactacgaaggagttgttgattgatatgataacgaagtt |
3198253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 3310666 - 3310494
Alignment:
| Q |
28 |
ggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctc |
127 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||| |||||||| ||||| | | |||||| || |||||||||| || |||| | ||| |||||| |
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| T |
3310666 |
ggcatgggaggacttggaaaaacgactcttgctaagtatgtttttaataaccagtatgtgaaagagcactttgattgtcactatttcttcacaatttctc |
3310567 |
T |
|
| Q |
128 |
aatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattcc |
200 |
Q |
| |
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| || |||||| |||| || |||| | || ||| |||| ||||| ||| |||||| ||||| |||||||| |
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| T |
3310566 |
agtcctacactctgagaaagatgttgattgatatggtaaacaagttttgcgtggacaataatgagcctattcc |
3310494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 41947256 - 41947158
Alignment:
| Q |
36 |
aggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctcaatcata |
134 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||||| | | || |||| || ||||||||| | | |||||| ||||||||||||||||| |
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| T |
41947256 |
aggactaggaaaaacaactctttctaagcatgtttttgataacaagcttgtaaaaaagcactttgattgtaggtgtttcatcacagtttctcaatcata |
41947158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 49386473 - 49386435
Alignment:
| Q |
34 |
ggaggactcggaaaaacaactcttgctaagcatgttttt |
72 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||| |
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| T |
49386473 |
ggaggacttggaaaaacaactctttctaagcatgttttt |
49386435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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