View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12208_high_4 (Length: 346)
Name: NF12208_high_4
Description: NF12208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12208_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 34445556 - 34445875
Alignment:
| Q |
18 |
gatatatacaaaagtgatcaatttatatggagtgtttgtaaactaaatatttttaagaatat--gttgaagaggcnnnnnnnnacgggatgatgaagagt |
115 |
Q |
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| T |
34445556 |
gatatatacaaaagtgatcaatttatatggagtgtttgtaaactaaatatttttaagaatatatgttgaagaggcttttttttacgggatgatgaagagt |
34445655 |
T |
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| Q |
116 |
tagtgtgtaaaaactgttaagaaaaactaatgactcgggtctttgcttatttttagtcacatttatctattacttagtctttagttaagaatactaaaca |
215 |
Q |
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| T |
34445656 |
tagtgtgtaaaaactgttaagaaaaactaatgactcgggtctttgcttatttttagtcacatttatctattacttagtctttagttaagaatactaaaca |
34445755 |
T |
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| Q |
216 |
aggaaaggaacgtaaatagaaagcaaaaatgatccatagaatagaacttcatgatccatataaagctgtaacatacattttgatccatagaaagcaaatg |
315 |
Q |
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| T |
34445756 |
aggaaaggaacgtaaatagaaagcaaaaatgatccatagaatagaacttcatgatccatataaagctgta----acattttgatccatagaaagcaaatg |
34445851 |
T |
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| Q |
316 |
tgctaatgactcgggtctctgctt |
339 |
Q |
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| T |
34445852 |
tgctaatgactcgggtctttgctt |
34445875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 34445854 - 34445898
Alignment:
| Q |
142 |
ctaatgactcgggtctttgcttatttttagtcacatttatctatt |
186 |
Q |
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| T |
34445854 |
ctaatgactcgggtctttgcttatttttagtcacatttatctatt |
34445898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 34434974 - 34435017
Alignment:
| Q |
290 |
acattttgatccatagaaagcaaatgtgctaatgactcgggtct |
333 |
Q |
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| T |
34434974 |
acattttgatccatagaaagcaaatgtgctaatgactcgggtct |
34435017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 34435002 - 34435046
Alignment:
| Q |
142 |
ctaatgactcgggtctttgcttatttttagtcacatttatctatt |
186 |
Q |
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| T |
34435002 |
ctaatgactcgggtcttcgcttatttttagtcacatttatctatt |
34435046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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