View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12208_low_2 (Length: 418)
Name: NF12208_low_2
Description: NF12208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12208_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 38701211 - 38701615
Alignment:
| Q |
1 |
ctgcgacatttatcaccaacagcatatttactaggaaataaatccctagcaactgtctcccaatccatgctaggcttattcaatagttattcggtagcat |
100 |
Q |
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| T |
38701211 |
ctgcgacatttatcgccaacagcagatttgctaggaaataaatccctagcaactgtctcccaatccatgctaggcttattcaat-------cggtagcat |
38701303 |
T |
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| Q |
101 |
tttccaagctaaattcgtttactagaacttagctacgagttagctgcgaatagttatagcaatttacattttttgtgtggtgtatggagcacttattaaa |
200 |
Q |
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| T |
38701304 |
tttccaagctaaattcgtttactagaacttagctacgagttagctgcgaatagt-atagcaatttacattttttgtgtggtgtatggagcacttcttaaa |
38701402 |
T |
|
| Q |
201 |
ctgcacacaagctggcaggtttcagaaattaaccaatgtaaaattgtctatgttgttacagttctagacaaatagtagcatgagtcttaaagaatgtggg |
300 |
Q |
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| T |
38701403 |
ctgcacacaagctggcaggtttcagaaattaaccaatgtaaaattgtctatgttgttgcagttctagacaaatagtagcatgagtcttaaagaatgtggg |
38701502 |
T |
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| Q |
301 |
gtggagacttacactacatctggaaactcttccataaattgagggccttatagttgcttgcttttggtttggagacttaatctttatgtaaggttagctg |
400 |
Q |
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| T |
38701503 |
gtggagacttacactacatctggaaactcttccataaattgagggccttatagttgcttgcttttggtttggagacttaatctttatgtaaggttagctg |
38701602 |
T |
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| Q |
401 |
cacaggttctgct |
413 |
Q |
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| T |
38701603 |
cactggttatgct |
38701615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 2678372 - 2678469
Alignment:
| Q |
199 |
aactgcacacaagctggcaggtttcagaaattaaccaatgtaaaattgtctatgttgttacagttctagacaaatagtagcatgagtcttaaagaatg |
296 |
Q |
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| T |
2678372 |
aactgcacagaagccgacaggtttcagaaattaagcagtgtgaaattgcctatgttgttgcagttctggacaaatagcagcatgagtcttgaagaatg |
2678469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 34227765 - 34227888
Alignment:
| Q |
183 |
tatggagcacttattaaactgcacacaagctggcaggtttcagaaattaaccaatgtaaaattgtctatgttgttacagttctagacaaatagtagcatg |
282 |
Q |
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| T |
34227765 |
tatggagcagttattgaactgcacacaagctgacaggtttcagaaattaaccacagtgaaatcgccaatgctgttgcagttctggacaaatagtagcatg |
34227864 |
T |
|
| Q |
283 |
agtcttaaagaatgtggggtggag |
306 |
Q |
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| T |
34227865 |
agacttgaagaatgtgaggtggag |
34227888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 2167280 - 2167196
Alignment:
| Q |
54 |
tgtctcccaatccatgcta-ggcttattcaatagttattcggtagcattttccaagctaaattcgtttactagaacttagctacg |
137 |
Q |
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| T |
2167280 |
tgtctctcaatccatgctacggctgattcaatagttattccgtagcatatctctagctaaataggtttactagaaattagctacg |
2167196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 19460286 - 19460194
Alignment:
| Q |
206 |
cacaagctggcaggtttcagaaattaaccaatgtaaaattgtctatgttgttacagttctagacaaatagtagcatgagtcttaaagaatgtg |
298 |
Q |
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| T |
19460286 |
cacaagctgacaagatttagaaattaaccaaggtgaaattttttatgttgttgcggttcaggacaaatagtagtatgagttttcaagaatgtg |
19460194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 19557964 - 19557872
Alignment:
| Q |
206 |
cacaagctggcaggtttcagaaattaaccaatgtaaaattgtctatgttgttacagttctagacaaatagtagcatgagtcttaaagaatgtg |
298 |
Q |
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| T |
19557964 |
cacaagctgacaagatttagaaattaaccaaggtgaaattttttatgttgttgcggttcaggacaaatagtagtatgagttttcaagaatgtg |
19557872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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