View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12209_low_1 (Length: 368)

Name: NF12209_low_1
Description: NF12209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12209_low_1
NF12209_low_1
[»] chr1 (5 HSPs)
chr1 (221-336)||(16473807-16473922)
chr1 (115-221)||(51165410-51165516)
chr1 (133-220)||(51164866-51164953)
chr1 (253-296)||(16473953-16473996)
chr1 (141-220)||(32240052-32240131)
[»] chr3 (1 HSPs)
chr3 (132-214)||(7266610-7266692)
[»] chr2 (1 HSPs)
chr2 (132-222)||(19014090-19014180)
[»] chr4 (1 HSPs)
chr4 (141-221)||(53371928-53372008)
[»] chr7 (1 HSPs)
chr7 (141-190)||(27117784-27117833)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 221 - 336
Target Start/End: Original strand, 16473807 - 16473922
Alignment:
Q  221 ctcgtcgcaccacatattttttaggaaaacagaataaactaaaatacatctaaccacatatttgtgtcttgaaatcacatataactatttgatttggatg 320  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  16473807 ctcgtcgcaccacattttttttaggaaaacagaataaactaaaatacatctaaccacatatttgtgtcttgaaatcatatataactatttgctttggatg 16473906  T
Q  321 ttatggtgcatttgat 336  Q
    ||||||||||||||||    
T  16473907 ttatggtgcatttgat 16473922  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 51165410 - 51165516
Alignment:
Q  115 tagttcttttaatctcggccattgagtttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactggacagatataaaaatggagtagatct 214  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||    
T  51165410 tagttcttttaatctcagccattgagtttttaattgccacgtgtcatgtatctgtgaaaagaaccgggtaactggacagatataaaaatggagcagatct 51165509  T
Q  215 gaactcc 221  Q
    | |||||    
T  51165510 gcactcc 51165516  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 51164953 - 51164866
Alignment:
Q  133 ccattgagtttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactggacagatataaaaatggagtagatctgaactc 220  Q
    |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  51164953 ccattgagtttttaattgccatgtgtcatgtatctgtgaaaagaaccgggtaactggacatatatagaaatggagcagatctgcactc 51164866  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 16473953 - 16473996
Alignment:
Q  253 aataaactaaaatacatctaaccacatatttgtgtcttgaaatc 296  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  16473953 aataaactaaaatacatctaaccatatttttgtgtcttgaaatc 16473996  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 32240052 - 32240131
Alignment:
Q  141 tttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactggacagatataaaaatggagtagatctgaactc 220  Q
    |||||| |||||| ||||||| |||| ||| |||||||||||||| ||||||| |  | |||||||| ||||||| ||||    
T  32240052 tttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcagatctgcactc 32240131  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 7266692 - 7266610
Alignment:
Q  132 gccattgagtttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactggacagatataaaaatggagtagatct 214  Q
    ||||| ||||||||||||||||||| |||| |||| ||| |||||||||||||| |||| ||||  | |||||||| ||||||    
T  7266692 gccatggagtttttaattgccatgtatcattcatcggtgaagagaaccgggtaaatggatagatgcataaatggagcagatct 7266610  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 19014180 - 19014090
Alignment:
Q  132 gccattgagtttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactggacagatataaaaatggagtagatctgaactcct 222  Q
    ||||||||  || ||||||||| |||||||| ||||||| | |||||||||||||||||| ||| || |||||||| ||||| | ||||||    
T  19014180 gccattgaacttgtaattgccacgtgtcatgtatctgtgaaaagaaccgggtaactggactgatttacaaatggagcagatccggactcct 19014090  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 53371928 - 53372008
Alignment:
Q  141 tttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactggacagatataaaaatggagtagatctgaactcc 221  Q
    |||||| |||||| ||||||| |||| ||| |||||||||||||| ||||||| |  | |||||||| ||||||| |||||    
T  53371928 tttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcagatctgcactcc 53372008  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 27117833 - 27117784
Alignment:
Q  141 tttttaattgccatgtgtcatgcatctgtgtagagaaccgggtaactgga 190  Q
    |||||| |||||||||||||| |||| ||| |||||||||||||| ||||    
T  27117833 tttttagttgccatgtgtcatccatcggtgaagagaaccgggtaaatgga 27117784  T

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