View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_high_1 (Length: 566)
Name: NF12210_high_1
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Complemental strand, 16792343 - 16791809
Alignment:
| Q |
19 |
atttcgagagcttgaatagagttttctgcagttgtggcgaaggattggtgtcggaaaacgtagtcgagagagaggctgcagttgtgaaaggtgtagttgg |
118 |
Q |
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| T |
16792343 |
atttcgagagcttgaatagagttttctgcagttgtggcgaaggattggtgtcggaaaacgtagtcgagagagaggctgcagttgtgaaaggtgtagttgg |
16792244 |
T |
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| Q |
119 |
attgatggcacaaaatactgaacagttgatggaagatttcagcattgcatcatgtgaaaaaggtgggattggagttatgaatatgaatggacagaaattg |
218 |
Q |
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| T |
16792243 |
attgatggcacaaaatactgaacagttgatggaagatttcagcattgcatcatgtgaaaaaggtgggattggagttatgaatatgaatggacagaaattg |
16792144 |
T |
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| Q |
219 |
cctatgcctcctactactggaaggtggcataggtcagatcctaacacaatattgagagttttgtgccatagaaatgaaagagctgctaattatttcttaa |
318 |
Q |
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| T |
16792143 |
cctatgcctcctactactggaaggtggcatagatcagatcctaacacaatattgagagttttgtgccatagaaatgaaagagctgctaattatttcttaa |
16792044 |
T |
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| Q |
319 |
agaggacattccatttagcaaagaggagatgatatacacttgcaacataaatattttttacaccgtcaatcaaattaattatatatttgttaaaagtcat |
418 |
Q |
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| T |
16792043 |
agaggacattccatttagcaaagaggagatgatatacacttgcaacataaatattttttacaccgtcaatcaaattaattatatatttgttaaaagtcat |
16791944 |
T |
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| Q |
419 |
agaaatgacagtttatgattggttgacggtgtaaaaaatatttatagagacagtgtatcaaagttaatttctctatgcatatacatcttggagaaaatat |
518 |
Q |
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| T |
16791943 |
agaaatgacagtttatgattggttgacggtgtaaaaaatttttattgagacagtgtatcaaagttaatttctctatgtatatacatcttggagaaaatat |
16791844 |
T |
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| Q |
519 |
ggatgaatattattggtatggggggaagaagcaca |
553 |
Q |
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| T |
16791843 |
ggatgaatattattggtatggggggaagaagcaca |
16791809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 346
Target Start/End: Original strand, 32735814 - 32736069
Alignment:
| Q |
88 |
gagaggctgcagttgtgaaaggtgtagttggattgatggcacaaaatactgaacagttgatggaagatttcagcattgcatcatgtgaaaaaggtgggat |
187 |
Q |
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||||||||||||| ||| |||| || ||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| | |||| || |
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| T |
32735814 |
gagaggctgcagtggtgcaaggagtgattgcattgatgggacaaagtactgaacagttgatggaagatttcactattgctgcatgtgaatcaagtggaat |
32735913 |
T |
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| Q |
188 |
tggagttatgaatatgaatggacagaaattgcctatgcctcctactactggaaggtggcataggtcagatcctaacacaatattgagagttttgtgccat |
287 |
Q |
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| T |
32735914 |
---aggtatgatgggaaatggacaaaagttaccaatgcctcctactacatgcaaatggaatagagcagatcctaatacaatgttgagggttttgtgctat |
32736010 |
T |
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| Q |
288 |
agaaatgaaagagctgctaattatttcttaaagaggacattccatttagcaaagaggag |
346 |
Q |
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|||||||| | ||||| ||| | || || ||||| ||||| || ||||| |||||||| |
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| T |
32736011 |
agaaatgatggtgctgcaaatcagtttttgaagagaacatttcagttagctaagaggag |
32736069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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