View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_high_10 (Length: 313)
Name: NF12210_high_10
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 52836150 - 52836438
Alignment:
| Q |
20 |
caaattgaatgggaacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaaggaagtg |
119 |
Q |
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| T |
52836150 |
caaattgaacgggaacgacatgacaaggtatttagtgtgatgaggaagtccatcttttgtattttgtgttagtatggtgcca-tgtataaaaaggaagtg |
52836248 |
T |
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| Q |
120 |
tattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaa------acattgataga |
213 |
Q |
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| T |
52836249 |
tattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggttgacagggttatgaaacgtgacaaaaaagtcggaaaatgataga |
52836348 |
T |
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| Q |
214 |
ggctgctggcattgattatgaatgtccccagattgtgagcttttttgcctttcttttactgattagttgttttcattgtccatgtctctg |
303 |
Q |
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| T |
52836349 |
ggctgctggcattgattatgaatgtccccagattgtgagctttttagcctttcttttactgattagttgttttcattgtccatgtctctg |
52836438 |
T |
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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 48967798 - 48967517
Alignment:
| Q |
20 |
caaattgaatgggaacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaaggaagtg |
119 |
Q |
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| T |
48967798 |
caaattgaacgagagctacatgacaaggtatctagtgtgatgaggaagtatatcatttgtatttagt--tactctggtgctc-tgtataaaaagaaaatg |
48967702 |
T |
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| Q |
120 |
tattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaaac-------attgatag |
212 |
Q |
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| T |
48967701 |
tactaattattgttattatttcaggaaagaacattggaagaacacaaaaagttggttgatagagttatgaagcgtgacaaaaaacgacgtaaaaagatag |
48967602 |
T |
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| Q |
213 |
aggctgctggcattgattatgaatgtccccagattgtgagctttttt-gcctttcttttactgattagttgttttcattgtccat |
296 |
Q |
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| T |
48967601 |
aggctgctggcattgattatgaatgtcctgagattgtgagcttttttcgcctttctttgactgattagttgttttgatagtccat |
48967517 |
T |
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