View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12210_high_11 (Length: 311)
Name: NF12210_high_11
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 13647522 - 13647689
Alignment:
| Q |
17 |
ataacaaaccttactcatacaatctacatgaaacatatactgaaattgtatggttaattctatattaagaatagtagtaaaatggtagcaaaaatagcac |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13647522 |
ataacaaaccttactcatt---tctacatgaaacatatactgaaattgtatggttaattctatattaagaatagtagtaaaatggtagcaaaaatagcac |
13647618 |
T |
|
| Q |
117 |
caaatatataatgtatggaaacacttttataagctattctttgtgtctaatgaattcacaaacacaaaccg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13647619 |
caaatatataatgtatggaaacacttttataagctattctttgtgtctaatgaattcacaaacacaaaccg |
13647689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 13648583 - 13648693
Alignment:
| Q |
179 |
cacaaaccgctctccttttcacttgaatagcaaatgatattaataaacaaactacaactcaaaatgagcacgagtttgtgtcgatagtacaaaattgatt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13648583 |
cacaaaccgctctccttttcacttgaatagcaaatgatattaataaacaaactacaactcaaaatgagcatgagtttgtgtcgatagtacaaaattgatt |
13648682 |
T |
|
| Q |
279 |
tcccaacaagc |
289 |
Q |
| |
|
||||||||||| |
|
|
| T |
13648683 |
tcccaacaagc |
13648693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University