View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12210_high_12 (Length: 286)

Name: NF12210_high_12
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12210_high_12
NF12210_high_12
[»] chr8 (12 HSPs)
chr8 (12-267)||(36200239-36200495)
chr8 (15-171)||(36209550-36209706)
chr8 (15-171)||(36188106-36188265)
chr8 (15-171)||(36196427-36196582)
chr8 (31-175)||(36184162-36184305)
chr8 (178-253)||(32100962-32101037)
chr8 (115-175)||(36212010-36212070)
chr8 (182-259)||(32994339-32994416)
chr8 (134-175)||(36214305-36214346)
chr8 (117-175)||(36190574-36190632)
chr8 (117-175)||(36197997-36198055)
chr8 (129-171)||(36201811-36201853)
[»] chr4 (4 HSPs)
chr4 (185-253)||(21691341-21691409)
chr4 (181-248)||(33456266-33456333)
chr4 (174-259)||(2635048-2635133)
chr4 (175-208)||(54705557-54705590)
[»] chr1 (1 HSPs)
chr1 (178-253)||(30557405-30557480)
[»] chr3 (1 HSPs)
chr3 (181-259)||(38022329-38022407)
[»] scaffold0168 (1 HSPs)
scaffold0168 (180-253)||(31717-31790)
[»] chr6 (2 HSPs)
chr6 (180-253)||(5724751-5724824)
chr6 (181-253)||(4910800-4910872)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 36200495 - 36200239
Alignment:
Q  12 agagagggaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaat 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200495 agagagagaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaat 36200396  T
Q  112 atattgtagctgttttgttttcaaagtttca-tttagaattttggatattaatttggagtgtaagattatgtgtatgtttggttccacttctagagggag 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200395 atattgtagctgttttgttttcaaagtttcattttagaattttggatattaatttggagtgtaagattatgtgtatgtttggttccacttctagagggag 36200296  T
Q  211 tcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagta 267  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36200295 tcgagttgattctgggagtgtagaattgattatgacatgtttgcttgctggcaagta 36200239  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 36209706 - 36209550
Alignment:
Q  15 gagggaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatata 114  Q
    |||||| |||||||| ||||||| | | || || |||||||||  ||||||||||||| |||||||||||||||| |||||||||||||  | ||| |||    
T  36209706 gagggaagaattcaccttcctctctaataagatggtttgaactatgtttggtatggttggttctgttaacaagtcattgtttgctaaatagtataacata 36209607  T
Q  115 ttgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 171  Q
    ||||||||||||| |||||||||||| ||||||| ||||| ||||||| ||||||||    
T  36209606 ttgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtg 36209550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 36188265 - 36188106
Alignment:
Q  15 gagggaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgtt---aacaagtcgttgtttgctaaatgatgtaat 111  Q
    ||||| ||||||||| ||||||| | | ||||| ||||||||| |||||||||||||| ||||||||   |||||||| | |||||||||||  | |||     
T  36188265 gaggggggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttctgttgttaacaagtcatggtttgctaaatagtataac 36188166  T
Q  112 atattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 171  Q
    |||||||| ||||||  |||||||||||| ||||||||||||| ||||||| ||||||||    
T  36188165 atattgtaactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtg 36188106  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 36196582 - 36196427
Alignment:
Q  15 gagggaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatata 114  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||  |||||| ||||||  |||||||||||||||  | ||||||||||  | ||  |||    
T  36196582 gagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtcact-tttgctaaatagtatagcata 36196484  T
Q  115 ttgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 171  Q
    ||||||||||||| |||||||| ||| ||||||| ||||  ||||||| ||||||||    
T  36196483 ttgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtg 36196427  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 36184305 - 36184162
Alignment:
Q  31 ttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgtt 130  Q
    |||||||| || ||||| |||||||||  ||||||||||||| |||||||||||| |||  | ||||||||||  | ||| |||||||| ||||||| ||    
T  36184305 ttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgttaacatgtcact-tttgctaaatagtataacatattgtaactgttttatt 36184207  T
Q  131 ttcaaagtttcatttagaattttggatattaatttggagtgtaag 175  Q
    |||||||||   |||||||||||| | ||||| || |||||||||    
T  36184206 ttcaaagttaagtttagaattttgaaaattaactttgagtgtaag 36184162  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 32100962 - 32101037
Alignment:
Q  178 tatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttg 253  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||   |||||||||||||| |||||| ||||    
T  32100962 tatgtgtatgtttggttccacttttagagggactagagttgattctgaatgtgtagaattgattctgacatgtttg 32101037  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 36212070 - 36212010
Alignment:
Q  115 ttgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 175  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| || | |||||||||    
T  36212070 ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaag 36212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 32994416 - 32994339
Alignment:
Q  182 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgct 259  Q
    ||||||||||||||||||||||||| |  |  | ||||||||||  |||||||||||||||||| || |||| |||||    
T  32994416 tgtatgtttggttccacttctagagaggttgtaattgattctggatgtgtagaattgattatgatatgtttggttgct 32994339  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 36214346 - 36214305
Alignment:
Q  134 aaagtttcatttagaattttggatattaatttggagtgtaag 175  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  36214346 aaagtttcatttagaattttggatactgatttggagtgtaag 36214305  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 36190632 - 36190574
Alignment:
Q  117 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 175  Q
    |||| |||||| |||||||||||| ||||| ||||||||||||| || | |||||||||    
T  36190632 gtagttgttttattttcaaagtttaatttaaaattttggatattgatctagagtgtaag 36190574  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 36198055 - 36197997
Alignment:
Q  117 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 175  Q
    |||| |||||| |||||||||||||||||| || |||||||||| || |||||| ||||    
T  36198055 gtagttgttttattttcaaagtttcatttataaatttggatattgatctggagtttaag 36197997  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 36201853 - 36201811
Alignment:
Q  129 ttttcaaagtttcatttagaattttggatattaatttggagtg 171  Q
    |||||||||||||||||||||||||||||| | |||| |||||    
T  36201853 ttttcaaagtttcatttagaattttggataatgattttgagtg 36201811  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 21691409 - 21691341
Alignment:
Q  185 atgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttg 253  Q
    |||||||||||||||||||||||||   || ||||||||||  |||||||||||||| |||||| ||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttg 21691341  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 33456266 - 33456333
Alignment:
Q  181 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacat 248  Q
    ||||||||||||||||||||||||||||| |  | |||||| ||   |||||||||||||||||||||    
T  33456266 gtgtatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatgacat 33456333  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 2635048 - 2635133
Alignment:
Q  174 agattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgct 259  Q
    |||||| |||||||||||||| ||||| ||||||||    | |||||||| | |||||| |||||||| |||||| |||| |||||    
T  2635048 agattaagtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgct 2635133  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 54705590 - 54705557
Alignment:
Q  175 gattatgtgtatgtttggttccacttctagaggg 208  Q
    |||| |||||||||||||||||||||||||||||    
T  54705590 gattttgtgtatgtttggttccacttctagaggg 54705557  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 30557405 - 30557480
Alignment:
Q  178 tatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttg 253  Q
    |||||||| ||||||| ||||||||| | ||| | || ||||||||||  |||||||||||||| |||||| ||||    
T  30557405 tatgtgtaagtttggtcccacttctacaaggactagaattgattctggaggtgtagaattgattctgacatgtttg 30557480  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 38022329 - 38022407
Alignment:
Q  181 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgct 259  Q
    |||||||||||||| |||||||||| |||    |||||||||| | ||||||||||||||| || ||| |||| |||||    
T  38022329 gtgtatgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgct 38022407  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 31717 - 31790
Alignment:
Q  180 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttg 253  Q
    ||||||||||||||||||||||||||| ||    | |||||||| |  |||||||||||||| |||||| ||||    
T  31717 tgtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttg 31790  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 5724824 - 5724751
Alignment:
Q  180 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttg 253  Q
    |||||||||||||||||||||||||||||     | || ||||| | ||||||||||||||| |||||| ||||    
T  5724824 tgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttg 5724751  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 4910800 - 4910872
Alignment:
Q  181 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttg 253  Q
    |||||||||||||||||||| ||||| || |  | |||||||||   |||||||||||||| |||||| ||||    
T  4910800 gtgtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttg 4910872  T

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