View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_high_14 (Length: 219)
Name: NF12210_high_14
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 39575433 - 39575616
Alignment:
| Q |
17 |
cagagaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagtt |
116 |
Q |
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| T |
39575433 |
cagaaaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagtt |
39575532 |
T |
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| Q |
117 |
aaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccgacacattaggttgtacggtaaccttcagttt |
200 |
Q |
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| T |
39575533 |
aaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccaacacattaggttgtacggtaaccttcagttt |
39575616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 39520794 - 39520971
Alignment:
| Q |
17 |
cagagaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagtt |
116 |
Q |
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| T |
39520794 |
cagaaaccaaaactacacctccaaccactgaacccaccactacaggaagactaaccttt---gaatccaaatcatcgaagggaatttcactagattgttc |
39520890 |
T |
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| Q |
117 |
aaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccgacacattaggttgtacggtaaccttcag |
197 |
Q |
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| T |
39520891 |
aatcactttcattagttctagcccatttaaaaatgctttcggtacaaaatccgacacattaggttgtacggtaacattcag |
39520971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 39524292 - 39524421
Alignment:
| Q |
30 |
taaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagttaaccactgtcatt |
129 |
Q |
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| T |
39524292 |
taaacctccaatcaccgaacccaccaccacaggaagactaatcttcctcgaatccgaatcatcattgggaattgggcctgatgattcaatcactttcatt |
39524391 |
T |
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| Q |
130 |
agttctagtccatttaaaaatgcgttcggt |
159 |
Q |
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| T |
39524392 |
agttctagcccgtttaaaaaagcattcggt |
39524421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 39543580 - 39543712
Alignment:
| Q |
27 |
aactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagttaaccactgtc |
126 |
Q |
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| T |
39543580 |
aactaaacctccaaccaccgaacccaccaccacaggaagattaatctttctcaaatccaaaccatctaagggaattggactggacgatttaatcattgtc |
39543679 |
T |
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| Q |
127 |
attagttctagtccatttaaaaatgcgttcggt |
159 |
Q |
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| T |
39543680 |
attagttctatcccgtttaaaaatgccttcggt |
39543712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 39579969 - 39580154
Alignment:
| Q |
17 |
cagagaccagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaat------ccaaatcatcagggggaattggacccga |
110 |
Q |
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| T |
39579969 |
cagaaaccagagctaaacctccaagaaccgaacccaacacaaccggaagacgaatcttctttgaattggaacccaaatcatcagaggggattaaacctga |
39580068 |
T |
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| Q |
111 |
ggagttaaccactgtcattagttctagtccatttaaaaatgcgttcggtacaaaatccgacacattaggttgtacggtaaccttca |
196 |
Q |
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| T |
39580069 |
tggttcaatcactttcattagttctagcccatttaaaaatgcattcggtacaaaatcggtcacattaggttttatggtaaccttca |
39580154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 39510541 - 39510676
Alignment:
| Q |
22 |
accagaactaaacctccaacgaccgaacccagcaccacaggaagactaatcttccccgaatccaaatcatcagggggaattggacccgaggagttaacca |
121 |
Q |
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| T |
39510541 |
accaaaactaaacctccaacaaccgaacccaccaccacaggaagactaacctt---cgaatccatatcatccgggggaatttcactagattgttcaatca |
39510637 |
T |
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| Q |
122 |
ctgtcattagttctagtccatttaaaaatgcgttcggta |
160 |
Q |
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| T |
39510638 |
cttccattagttctagcccatttaaaaatgcattcggta |
39510676 |
T |
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