View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_high_5 (Length: 407)
Name: NF12210_high_5
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 171 - 391
Target Start/End: Original strand, 23177758 - 23177978
Alignment:
| Q |
171 |
ttgtttcttccacacataaactgatcagttttgcataatatctttataaggtggtgatgaatttttgaaaagcattggtattaattttgctgatgtgatt |
270 |
Q |
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| T |
23177758 |
ttgtttcttccacacataaactgatcagttatgcataatatctttataaggtggtgatgaattttttaaaagcattggtattaattttgctgatgtgatt |
23177857 |
T |
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| Q |
271 |
cggagtggtgatgcaatggcaatgtcaaaattatccctcaaattccttgcaccattaagagtaagtcacaccaaatttgtttgttannnnnnngttaggt |
370 |
Q |
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| T |
23177858 |
cggagtggtgatgcaatggcactgtcaaatttatccctcaaattccttgcaccattaagagtaagtcacaccaaatttgtttattatttttttgttaggt |
23177957 |
T |
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| Q |
371 |
ataatattttgatacaaatag |
391 |
Q |
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| T |
23177958 |
ataatattttgatacaaatag |
23177978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 23177179 - 23177332
Alignment:
| Q |
16 |
tgtgagatagagtgattatgtaaaatgaatgagtgaaatttaaaattacttgaaaattgaaaagataggaaccctaatcctccaggttccatgttttcct |
115 |
Q |
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| T |
23177179 |
tgtgagatagagtggttatgtaaaatgaatgagtgaaatttaaaattacttgaaaattgaaaagataggaaccctaatcctccaggttccatgttttcct |
23177278 |
T |
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| Q |
116 |
tttcctatttcggctcttcctcatagtctgaccctccataattttcttcttctga |
170 |
Q |
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| T |
23177279 |
tttcctattccggctcttcctcatagtctga-cctccataattttcttcttctga |
23177332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 24840262 - 24840182
Alignment:
| Q |
83 |
ggaaccctaatcctccaggttccatgttttccttttcctatttcggctcttcctcatagtctgaccctccataattttctt |
163 |
Q |
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| T |
24840262 |
ggaaccccaaaccttcaggttccatgtcttccttttcctcttttggctcttcctcatagtttgaccgtccataatcttctt |
24840182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 338
Target Start/End: Original strand, 23223126 - 23223257
Alignment:
| Q |
207 |
aatatctttataaggtggtgatgaatttttgaaaagcattggtattaattttgctgatgtgattcggagtggtgatgcaatggcaatgtcaaaattatcc |
306 |
Q |
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| T |
23223126 |
aataccttcataaggtcgtcatgaatttttggaaagcataggcattaattgtgatgccgtggctcgctgtggtgatgcattggcattgtctgaactatcc |
23223225 |
T |
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| Q |
307 |
ctcaaattccttgcaccattaagagtaagtca |
338 |
Q |
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| T |
23223226 |
ttcaaattccttgcacctctaagagtaagtca |
23223257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 23512329 - 23512402
Alignment:
| Q |
84 |
gaaccctaatcctccaggttccatgttttccttttcctatttcggctcttcctcatagtctgaccctccataat |
157 |
Q |
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| T |
23512329 |
gaaccccaaacctccaggttccatgttttcctcttcttcttctggctcttcctcatagtctgaccatccataat |
23512402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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