View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_high_8 (Length: 346)
Name: NF12210_high_8
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33019361 - 33019696
Alignment:
| Q |
1 |
ccctccccttttatcctcttcctttttcatcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttacctccaccggaaccctaacaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33019361 |
ccctccccttttatcctcttcctttttcatcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttaccttcaccggaaccctaacaac |
33019460 |
T |
|
| Q |
101 |
aacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33019461 |
aacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatccttattcaacttcgatgcctctgcaag |
33019560 |
T |
|
| Q |
201 |
tcattcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaaacactcaccatcgtctcatgctaagctctcgcaacgacttag |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33019561 |
tcagtcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaaacactcgccatcgtctcatgctaagctctcgcaacgacttag |
33019660 |
T |
|
| Q |
301 |
acaagttagttctctttgattccccaatgctctctg |
336 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||| |
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| T |
33019661 |
acgagttagttctctttgattccccaatgccctctg |
33019696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 57 - 336
Target Start/End: Original strand, 33025815 - 33026093
Alignment:
| Q |
57 |
aagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgca |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33025815 |
aagacgcatcaactcactcttacctccaccggaaccctaactacaaccgctcatccactacctactcttccattcgatctcatcgctgaaattctatgca |
33025914 |
T |
|
| Q |
157 |
gactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtc |
256 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||| ||||||| |
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| T |
33025915 |
gactcccggtaaaactcctcattcaacttcgatgcctatgcaagtcattcaattcgttagtttctgatcc-aaattcgcttaaaaacatcttcgcatgtc |
33026013 |
T |
|
| Q |
257 |
aaacactcaccatcgtctcatgctaagctctcgcaacgacttagacaagttagttctctttgattccccaatgctctctg |
336 |
Q |
| |
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|||||| ||||| |||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||| ||||| |
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| T |
33026014 |
aaacacgcaccaccgtctcatgctaagctctaccaacgagttagacgagttagttctctttgattccccgatgccctctg |
33026093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 110 - 336
Target Start/End: Original strand, 33037364 - 33037590
Alignment:
| Q |
110 |
gccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaat |
209 |
Q |
| |
|
|||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| ||||| |
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| T |
33037364 |
gccactacccactcttccgtttgatctcgtcgctgaaattctatgcagacttccggtaaaactcctcattcaacttcgatgtctctgtaagtctatcaat |
33037463 |
T |
|
| Q |
210 |
tcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaaacactcaccatcgtctcatgctaagctctcgcaacgacttagacaagttag |
309 |
Q |
| |
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|| ||| |||||||||| ||||| ||||| ||||||||| ||||||||||||| | ||| | ||||||| |||||||| |||||||||||| |||||| |
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| T |
33037464 |
tcgttaatttctgatcctaaattcgctaagaaacatcttcgcatgtcaaacacgcgccaccatctcatgttaagctctaataacgacttagacgagttag |
33037563 |
T |
|
| Q |
310 |
ttctctttgattccccaatgctctctg |
336 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
33037564 |
ttctctttgattccccaatgccctctg |
33037590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 33023377 - 33023552
Alignment:
| Q |
29 |
atcactcatggaggaaacaatcgtaacaaagacgcatcaactcactcttacctccaccggaaccctaacaacaacaactccgccactacccactcttcca |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||| ||| ||||||| |||| ||||||||| | ||||||||||| | ||||||||| |
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| T |
33023377 |
atcactcatggaggaaacaatcacaacaaagatacaacaattcattcttacc-------gaactctaacaacatccgctccgccactaacaactcttcca |
33023469 |
T |
|
| Q |
129 |
ttcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattc |
211 |
Q |
| |
|
|| |||||| | |||||||| || || ||| |||| || ||| ||||| ||||||||| ||| || |||||||| |||||||| |
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| T |
33023470 |
tttgatctccttgctgaaatcctttgtagaatccctgtgaaactcctccttcaacttcaatgtctttgcaagtccttcaattc |
33023552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 258
Target Start/End: Original strand, 27754828 - 27755003
Alignment:
| Q |
83 |
caccggaaccctaacaacaacaactccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaa |
182 |
Q |
| |
|
||||| |||||||||| || | |||||||||| ||||||||| ||||||||||||||| || ||||| |||| || || || || | || ||||| |
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| T |
27754828 |
caccgaaaccctaacatcatctcctccgccacttcccactcttacattcgatctcatcgaagagattctgtgcatgcttcccgtgaagttactacttcaa |
27754927 |
T |
|
| Q |
183 |
cttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaa |
258 |
Q |
| |
|
||| |||||||||| ||||| || ||||| ||| | || |||||||||||||| || ||||| ||| || |||||| |
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| T |
27754928 |
ctttgatgcctctgtaagtcctttaattctttaatctccgatccaaaatttgccaagaaacaccttcgcttgtcaa |
27755003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 7443820 - 7443711
Alignment:
| Q |
117 |
cccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaattcattag |
216 |
Q |
| |
|
||||||||||| ||||||||| || |||| ||||| ||||| || || || ||| | ||||| |||||||| |||||||| |||| |||||||| ||| |
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|
| T |
7443820 |
cccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctttaa |
7443721 |
T |
|
| Q |
217 |
tttctgatcc |
226 |
Q |
| |
|
|||||||||| |
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|
| T |
7443720 |
tttctgatcc |
7443711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 12217241 - 12217388
Alignment:
| Q |
111 |
ccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaatt |
210 |
Q |
| |
|
||||||||||| ||||| || ||||| | || |||||| | || ||| | |||||||| | |||||||| ||||| |||||||| ||||| ||||||| |
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|
| T |
12217241 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaatt |
12217340 |
T |
|
| Q |
211 |
cattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaa |
258 |
Q |
| |
|
| ||| | |||||||| |||||||| | ||||||||| || |||||| |
|
|
| T |
12217341 |
ctttaatctctgatcccaaatttgcagagaaacatcttcgcttgtcaa |
12217388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 9566582 - 9566517
Alignment:
| Q |
183 |
cttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctt |
248 |
Q |
| |
|
||||| |||||||||||||| |||||||| | |||||||||||||||| || |||||||||||| |
|
|
| T |
9566582 |
cttcggtgcctctgcaagtccttcaattctcttatttctgatccaaaattcgcaaaaaaacatctt |
9566517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 7428439 - 7428315
Alignment:
| Q |
111 |
ccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattcaatt |
210 |
Q |
| |
|
||||||||||| ||||| || ||||| | || |||||| | || ||| | |||||||| | |||||||| ||||| |||||||| |||| ||||||| |
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|
| T |
7428439 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt |
7428340 |
T |
|
| Q |
211 |
cattagtttctgatccaaaatttgc |
235 |
Q |
| |
|
| ||| | |||||||| |||||||| |
|
|
| T |
7428339 |
ctttaatctctgatcccaaatttgc |
7428315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 37754191 - 37754091
Alignment:
| Q |
108 |
ccgccactacccactcttccattcgatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcattca |
207 |
Q |
| |
|
|||||||| ||||||||||| ||||| | |||| |||||||||||||||||||| || || | ||| | ||||| || |||||||| ||||| |||| |
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|
| T |
37754191 |
ccgccactgcccactcttcctttcgaattggtcgcagaaattctatgcagactccctgtcaagttactcttacaactccggtgcctctgtaagtccttca |
37754092 |
T |
|
| Q |
208 |
a |
208 |
Q |
| |
|
| |
|
|
| T |
37754091 |
a |
37754091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 324
Target Start/End: Complemental strand, 24418235 - 24418089
Alignment:
| Q |
178 |
ttcaacttcgatgcctctgcaagtcattcaattcattagtttctgatccaaaatttgctaaaaaacatctttgcatgtcaaacactcaccatcgtctcat |
277 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||| | |||||||| ||||| || || || || ||| || |||||| || | |||||| ||||| |
|
|
| T |
24418235 |
ttcaacttcgctgtctctgcaagtccttcaattcattaatctctgatcccaaattcgcaaacaagcaccttcgcttgtcaaccaggcgccatcgcctcat |
24418136 |
T |
|
| Q |
278 |
gctaagctctcgcaacgacttagacaagttagttctctttgattccc |
324 |
Q |
| |
|
| ||| ||| ||||||||||| | |||||||||||| |||||| |
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|
| T |
24418135 |
gttaatgtctaccaacgacttaggtcacttagttctctttaattccc |
24418089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 25869541 - 25869469
Alignment:
| Q |
132 |
gatctcatcgctgaaattctatgcagactcccggtaaaaatcctcattcaacttcgatgcctctgcaagtcat |
204 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| | ||| ||||||| ||||| || ||| | |||||||||| |
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|
| T |
25869541 |
gatctcatcgctgaaatcctatgcagattccccatcaaattcctcatgcaactccgctgcatttgcaagtcat |
25869469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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