View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12210_low_13 (Length: 270)

Name: NF12210_low_13
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12210_low_13
NF12210_low_13
[»] chr4 (8 HSPs)
chr4 (4-241)||(42356559-42356796)
chr4 (4-137)||(42357626-42357759)
chr4 (240-270)||(24347957-24347987)
chr4 (241-270)||(56030188-56030217)
chr4 (242-270)||(5100743-5100771)
chr4 (242-270)||(14787993-14788021)
chr4 (242-270)||(14789543-14789571)
chr4 (242-270)||(22135191-22135219)
[»] chr1 (14 HSPs)
chr1 (235-270)||(17325199-17325234)
chr1 (240-270)||(28998816-28998846)
chr1 (240-270)||(29004532-29004562)
chr1 (241-270)||(15295411-15295440)
chr1 (241-270)||(24325346-24325375)
chr1 (242-270)||(4131854-4131882)
chr1 (242-270)||(9459985-9460013)
chr1 (242-270)||(9463812-9463840)
chr1 (242-270)||(21964369-21964397)
chr1 (242-270)||(31736087-31736115)
chr1 (242-270)||(39931762-39931790)
chr1 (242-270)||(46432608-46432636)
chr1 (242-270)||(47905956-47905984)
chr1 (242-270)||(48664852-48664880)
[»] chr8 (6 HSPs)
chr8 (240-270)||(3873748-3873778)
chr8 (242-270)||(3265724-3265752)
chr8 (242-270)||(28283785-28283813)
chr8 (242-270)||(32339094-32339122)
chr8 (242-270)||(41384493-41384521)
chr8 (242-270)||(43529871-43529899)
[»] chr6 (5 HSPs)
chr6 (240-270)||(19705137-19705167)
chr6 (241-270)||(30035168-30035197)
chr6 (242-270)||(2629451-2629479)
chr6 (242-270)||(5275900-5275928)
chr6 (242-270)||(22858508-22858536)
[»] chr2 (5 HSPs)
chr2 (240-270)||(35218537-35218567)
chr2 (241-270)||(27136477-27136506)
chr2 (242-270)||(23452801-23452829)
chr2 (242-270)||(35216156-35216184)
chr2 (242-270)||(42924066-42924094)
[»] chr7 (13 HSPs)
chr7 (241-270)||(37412688-37412717)
chr7 (242-270)||(443326-443354)
chr7 (242-270)||(1606171-1606199)
chr7 (242-270)||(1849665-1849693)
chr7 (242-270)||(3035415-3035443)
chr7 (242-270)||(7092740-7092768)
chr7 (242-270)||(7094987-7095015)
chr7 (242-270)||(7470593-7470621)
chr7 (242-270)||(7472546-7472574)
chr7 (242-270)||(11756925-11756953)
chr7 (242-270)||(18345237-18345265)
chr7 (242-270)||(20299155-20299183)
chr7 (242-270)||(28487249-28487277)
[»] chr3 (10 HSPs)
chr3 (241-270)||(455572-455601)
chr3 (241-270)||(1313081-1313110)
chr3 (241-270)||(4104455-4104484)
chr3 (242-270)||(457950-457978)
chr3 (242-270)||(746422-746450)
chr3 (242-270)||(10622099-10622127)
chr3 (242-270)||(25533107-25533135)
chr3 (242-270)||(41848804-41848832)
chr3 (242-270)||(42991953-42991981)
chr3 (242-270)||(51943042-51943070)
[»] scaffold1674 (1 HSPs)
scaffold1674 (242-270)||(67-95)
[»] scaffold0005 (2 HSPs)
scaffold0005 (242-270)||(50159-50187)
scaffold0005 (242-270)||(51709-51737)
[»] chr5 (8 HSPs)
chr5 (242-270)||(15551925-15551953)
chr5 (242-270)||(18466411-18466439)
chr5 (242-270)||(18468698-18468726)
chr5 (242-270)||(25803707-25803735)
chr5 (242-270)||(26097421-26097449)
chr5 (242-270)||(26098813-26098841)
chr5 (242-270)||(27910135-27910163)
chr5 (242-270)||(27912219-27912247)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 42356559 - 42356796
Alignment:
Q  4 aacactatcattgtcgatgatttcccgataagcattgcagtatgtgtaatgatcgtccctttcaaacctctaggtagctacattgtcatgggccgatggc 103  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42356559 aacactatcattgtcgatgatttcccgataagcattgcaatatgtgtaatgatcgtccctttcaaacctctaggtagctacattgtcatgggccgatggc 42356658  T
Q  104 agcagtggcgtttgggaagtttgttgagttgtgtcaaaatcaaaaacatagtagatgaacttcatatttcattgcttggtatttgaccgcagcatatgcg 203  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42356659 agcagtggcgtttgggaagtttgttgagttgtgccaaaatcaaaaacatagtagatgaacttcatatttcattgcttggtatttgacctcagcatatgcg 42356758  T
Q  204 ttatcgtaaactcatcccacacgatgtgcaaatatgtt 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42356759 ttatcgtaaactcatcccacacgatgtgcaaatatgtt 42356796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 42357626 - 42357759
Alignment:
Q  4 aacactatcattgtcgatgatttcccgataagcattgcagtatgtgtaatgatcgtccctttcaaacctctaggtagctacattgtcatgggccgatggc 103  Q
    |||||||||||||| ||||||||| | ||||||||| | |  |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  42357626 aacactatcattgttgatgatttctcaataagcattacggactgtgtaatgatcgtccctttcaaacctccaggtagctacattgtcatggaccaatggc 42357725  T
Q  104 agcagtggcgtttgggaagtttgttgagttgtgt 137  Q
    |  |||||| ||||| ||||||||||||||||||    
T  42357726 aatagtggcatttggaaagtttgttgagttgtgt 42357759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 270
Target Start/End: Original strand, 24347957 - 24347987
Alignment:
Q  240 tttgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||||    
T  24347957 tttgttgtagtatgactcaaaatttgatgga 24347987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 56030188 - 56030217
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  56030188 ttgttgtagtatgactcaaaatttgatgga 56030217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 5100743 - 5100771
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  5100743 tgttgtagtatgactcaaaatttgatgga 5100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 14788021 - 14787993
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  14788021 tgttgtagtatgactcaaaatttgatgga 14787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 14789571 - 14789543
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  14789571 tgttgtagtatgactcaaaatttgatgga 14789543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 22135219 - 22135191
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  22135219 tgttgtagtatgactcaaaatttgatgga 22135191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 17325234 - 17325199
Alignment:
Q  235 atatgtttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17325234 atatggttgttgtagtatgactcaaaatttgatgga 17325199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 28998846 - 28998816
Alignment:
Q  240 tttgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||||    
T  28998846 tttgttgtagtatgactcaaaatttgatgga 28998816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 29004562 - 29004532
Alignment:
Q  240 tttgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||||    
T  29004562 tttgttgtagtatgactcaaaatttgatgga 29004532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 15295440 - 15295411
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  15295440 ttgttgtagtatgactcaaaatttgatgga 15295411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 24325346 - 24325375
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  24325346 ttgttgtagtatgactcaaaatttgatgga 24325375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 4131882 - 4131854
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  4131882 tgttgtagtatgactcaaaatttgatgga 4131854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 9460013 - 9459985
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  9460013 tgttgtagtatgactcaaaatttgatgga 9459985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 9463840 - 9463812
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  9463840 tgttgtagtatgactcaaaatttgatgga 9463812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 21964397 - 21964369
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  21964397 tgttgtagtatgactcaaaatttgatgga 21964369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 31736115 - 31736087
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  31736115 tgttgtagtatgactcaaaatttgatgga 31736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 39931762 - 39931790
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  39931762 tgttgtagtatgactcaaaatttgatgga 39931790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 46432636 - 46432608
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  46432636 tgttgtagtatgactcaaaatttgatgga 46432608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 47905956 - 47905984
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  47905956 tgttgtagtatgactcaaaatttgatgga 47905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 48664852 - 48664880
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  48664852 tgttgtagtatgactcaaaatttgatgga 48664880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 270
Target Start/End: Original strand, 3873748 - 3873778
Alignment:
Q  240 tttgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||||    
T  3873748 tttgttgtagtatgactcaaaatttgatgga 3873778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 3265752 - 3265724
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  3265752 tgttgtagtatgactcaaaatttgatgga 3265724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 28283813 - 28283785
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  28283813 tgttgtagtatgactcaaaatttgatgga 28283785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 32339094 - 32339122
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  32339094 tgttgtagtatgactcaaaatttgatgga 32339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 41384493 - 41384521
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  41384493 tgttgtagtatgactcaaaatttgatgga 41384521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 43529871 - 43529899
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  43529871 tgttgtagtatgactcaaaatttgatgga 43529899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 19705167 - 19705137
Alignment:
Q  240 tttgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||||    
T  19705167 tttgttgtagtatgactcaaaatttgatgga 19705137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 30035197 - 30035168
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  30035197 ttgttgtagtatgactcaaaatttgatgga 30035168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 2629479 - 2629451
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  2629479 tgttgtagtatgactcaaaatttgatgga 2629451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 5275928 - 5275900
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  5275928 tgttgtagtatgactcaaaatttgatgga 5275900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 22858536 - 22858508
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  22858536 tgttgtagtatgactcaaaatttgatgga 22858508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 35218567 - 35218537
Alignment:
Q  240 tttgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||||    
T  35218567 tttgttgtagtatgactcaaaatttgatgga 35218537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 27136506 - 27136477
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  27136506 ttgttgtagtatgactcaaaatttgatgga 27136477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 23452829 - 23452801
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  23452829 tgttgtagtatgactcaaaatttgatgga 23452801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 35216184 - 35216156
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  35216184 tgttgtagtatgactcaaaatttgatgga 35216156  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 42924094 - 42924066
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  42924094 tgttgtagtatgactcaaaatttgatgga 42924066  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 37412717 - 37412688
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  37412717 ttgttgtagtatgactcaaaatttgatgga 37412688  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 443326 - 443354
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  443326 tgttgtagtatgactcaaaatttgatgga 443354  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 1606171 - 1606199
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  1606171 tgttgtagtatgactcaaaatttgatgga 1606199  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 1849665 - 1849693
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  1849665 tgttgtagtatgactcaaaatttgatgga 1849693  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 3035415 - 3035443
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  3035415 tgttgtagtatgactcaaaatttgatgga 3035443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 7092768 - 7092740
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  7092768 tgttgtagtatgactcaaaatttgatgga 7092740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 7095015 - 7094987
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  7095015 tgttgtagtatgactcaaaatttgatgga 7094987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 7470621 - 7470593
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  7470621 tgttgtagtatgactcaaaatttgatgga 7470593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 7472574 - 7472546
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  7472574 tgttgtagtatgactcaaaatttgatgga 7472546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 11756925 - 11756953
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  11756925 tgttgtagtatgactcaaaatttgatgga 11756953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 18345237 - 18345265
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  18345237 tgttgtagtatgactcaaaatttgatgga 18345265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 20299155 - 20299183
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  20299155 tgttgtagtatgactcaaaatttgatgga 20299183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 28487249 - 28487277
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  28487249 tgttgtagtatgactcaaaatttgatgga 28487277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 455572 - 455601
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  455572 ttgttgtagtatgactcaaaatttgatgga 455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 1313081 - 1313110
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  1313081 ttgttgtagtatgactcaaaatttgatgga 1313110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 4104484 - 4104455
Alignment:
Q  241 ttgttgtagtatgactcaaaatttgatgga 270  Q
    ||||||||||||||||||||||||||||||    
T  4104484 ttgttgtagtatgactcaaaatttgatgga 4104455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 457950 - 457978
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  457950 tgttgtagtatgactcaaaatttgatgga 457978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 746422 - 746450
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  746422 tgttgtagtatgactcaaaatttgatgga 746450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 10622127 - 10622099
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  10622127 tgttgtagtatgactcaaaatttgatgga 10622099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 25533107 - 25533135
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  25533107 tgttgtagtatgactcaaaatttgatgga 25533135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 41848804 - 41848832
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  41848804 tgttgtagtatgactcaaaatttgatgga 41848832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 42991953 - 42991981
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  42991953 tgttgtagtatgactcaaaatttgatgga 42991981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 51943042 - 51943070
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  51943042 tgttgtagtatgactcaaaatttgatgga 51943070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 95 - 67
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  95 tgttgtagtatgactcaaaatttgatgga 67  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 50159 - 50187
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  50159 tgttgtagtatgactcaaaatttgatgga 50187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 51709 - 51737
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  51709 tgttgtagtatgactcaaaatttgatgga 51737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 15551925 - 15551953
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  15551925 tgttgtagtatgactcaaaatttgatgga 15551953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 18466411 - 18466439
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  18466411 tgttgtagtatgactcaaaatttgatgga 18466439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 18468698 - 18468726
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  18468698 tgttgtagtatgactcaaaatttgatgga 18468726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 25803707 - 25803735
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  25803707 tgttgtagtatgactcaaaatttgatgga 25803735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 26097421 - 26097449
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  26097421 tgttgtagtatgactcaaaatttgatgga 26097449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 26098841 - 26098813
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  26098841 tgttgtagtatgactcaaaatttgatgga 26098813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 27910135 - 27910163
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  27910135 tgttgtagtatgactcaaaatttgatgga 27910163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 27912219 - 27912247
Alignment:
Q  242 tgttgtagtatgactcaaaatttgatgga 270  Q
    |||||||||||||||||||||||||||||    
T  27912219 tgttgtagtatgactcaaaatttgatgga 27912247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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