View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12210_low_2 (Length: 447)

Name: NF12210_low_2
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12210_low_2
NF12210_low_2
[»] chr7 (2 HSPs)
chr7 (1-447)||(19119015-19119464)
chr7 (1-296)||(19111918-19112213)
[»] chr4 (2 HSPs)
chr4 (407-447)||(50059490-50059530)
chr4 (407-447)||(21359225-21359265)
[»] scaffold0491 (1 HSPs)
scaffold0491 (409-447)||(3679-3717)
[»] chr8 (2 HSPs)
chr8 (409-447)||(18741874-18741912)
chr8 (409-447)||(18746838-18746876)
[»] chr5 (1 HSPs)
chr5 (413-447)||(7678719-7678753)
[»] chr3 (1 HSPs)
chr3 (409-447)||(40122656-40122694)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 19119015 - 19119464
Alignment:
Q  1 attaaaacatatatgtttaagtaagtaaaaataaatgaagtctgtgctcaaatcaatacctcaagattttttctttcgcctgtttcaaactaatgctatc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19119015 attaaaacatatatgtttaagtaaataaaaataaatgaagtctgtgctcaaatcaatacctcaagattttttctttcgcctgtttcaaactaatgctatc 19119114  T
Q  101 aatcttcaattcatcataactttgcaggatttcttggtagatactaagtctcttcctttcaccgacaacaaaaccaacaccatttgaaggctgtgcagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19119115 aatcttcaattcatcataactttgcaggatttcttggtagatactaagtctcttcctttcaccgacaacaaaaccaacaccatttgaaggctgtgcagtt 19119214  T
Q  201 tcttcattaacttccccgaaatctaatccattcttttcattcactctatcgtctttattctgcaaatgcagagtatccctgaaacattagaaatcacaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19119215 tcttcattaacttccccgaaatctaatccattcttttcattttctctatcgtctttattctgcaagtgcagagtatccctgaaacattagaaatcacaaa 19119314  T
Q  301 cttatcatcaagtcactgtcagaatacaaatgtcaaccaagtgatgatacaataaggtcaagtaataaaaggaatcaagttaaatatacattaataaaca 400  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19119315 ctcatcatcaagtcactgtcagaatacaaatgtcaaccaagtgatgatacaataaggtcaagaaataaaaggaatcaagttaaatatacattaataaaca 19119414  T
Q  401 gaaatgaa---aacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||||||   ||| |||||||| ||||||||||||||||||||||||||    
T  19119415 gaaatgaaaacaacaacaacaaatttttatcccactaagtggggtcggct 19119464  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 19111918 - 19112213
Alignment:
Q  1 attaaaacatatatgtttaagtaagtaaaaataaatgaagtctgtgctcaaatcaatacctcaagattttttctttcgcctgtttcaaactaatgctatc 100  Q
    ||||| ||||||||  |||||||| |||||| ||||||| | || | ||||||||||||||||||||||||||||| || | ||||||| |  |||||||    
T  19111918 attaagacatatatagttaagtaaataaaaacaaatgaaatttgagttcaaatcaatacctcaagattttttctttggcttctttcaaattcttgctatc 19112017  T
Q  101 aatcttcaattcatcataactttgcaggatttcttggtagatactaagtctcttcctttcaccgacaacaaaaccaacaccatttgaaggctgtgcagtt 200  Q
    |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||| || || || ||   |||| |    || ||    
T  19112018 aatcttcaatgcatcataactttgcaggatttcttggtaaataccaagtcgcttcctttcaccgataacagaatcagcagcagaagaagtcgccacactt 19112117  T
Q  201 tcttcattaacttccccgaaatctaatccattcttttcattcactctatcgtctttattctgcaaatgcagagtatccctgaaacattagaaatca 296  Q
    |||||| ||||||| |||||||||||| ||||||| |||||||| |||| |||||||| |||||||    || |||||||||||||||| ||||||    
T  19112118 tcttcactaacttctccgaaatctaattcattcttctcattcacactattgtctttatcctgcaaacctcgactatccctgaaacattataaatca 19112213  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 50059490 - 50059530
Alignment:
Q  407 aaaacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  50059490 aaaacaacaacaaagtcttatcccactaagtggggtcggct 50059530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 21359225 - 21359265
Alignment:
Q  407 aaaacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||| |||||||||  ||||||||||||||||||||||||    
T  21359225 aaaacaacaacaaagccttatcccactaagtggggtcggct 21359265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 3717 - 3679
Alignment:
Q  409 aacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  3717 aacgacaaccaagtcttatcccactaagtggggtcggct 3679  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 18741912 - 18741874
Alignment:
Q  409 aacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  18741912 aacgacaaccaagtcttatcccactaagtggggtcggct 18741874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 18746876 - 18746838
Alignment:
Q  409 aacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  18746876 aacgacaaccaagtcttatcccactaagtggggtcggct 18746838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Complemental strand, 7678753 - 7678719
Alignment:
Q  413 acaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||| |||||||||||||||||||||||||||||    
T  7678753 acaaccaagttttatcccactaagtggggtcggct 7678719  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 40122694 - 40122656
Alignment:
Q  409 aacgacaacaaagttttatcccactaagtggggtcggct 447  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  40122694 aacgacaaccaagttttatccaactaagtggggtcggct 40122656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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