View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_low_3 (Length: 417)
Name: NF12210_low_3
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 28783029 - 28783278
Alignment:
| Q |
19 |
gtttcttgaatggaggaagaacaactggtggtttgtatattggaacaacgggtggctttggaattactactggaggcttatatattggaacaggtggtag |
118 |
Q |
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| T |
28783029 |
gtttcttgaatggaggaagaataactggtggtttgtatattggaacaacgggtggctttggaattactactggaggcttatatattggaacaggtggtag |
28783128 |
T |
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| Q |
119 |
aactgggtgctcaatctttggtggacatggtttcttgatcgggactggtggtggaagtgcctttggaaccggtggaggtttgtatactggaacaggtggt |
218 |
Q |
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| T |
28783129 |
aactgggtgctcaatctttggtggacatggtttcttgatcgggactggtggtggaagtgcctttggaaccggtggaggtttgtatactggaacaggtggt |
28783228 |
T |
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| Q |
219 |
aaaactggatgttcaacctttggtggtggacatggtttcttgactggaac |
268 |
Q |
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| T |
28783229 |
aaaactggatgttcaacctttggtggtggacatggtttcttgaccggaac |
28783278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 89 - 403
Target Start/End: Original strand, 28783201 - 28783518
Alignment:
| Q |
89 |
tggaggcttatatattggaacaggtggtagaactgggtgctcaatctttggt---ggacatggtttcttgatcgggactggtggtggaagtgcctttgga |
185 |
Q |
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| T |
28783201 |
tggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtggctttgga |
28783300 |
T |
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| Q |
186 |
accggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggaggaagaggtt |
285 |
Q |
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| T |
28783301 |
actggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggaggaagaggtt |
28783400 |
T |
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| Q |
286 |
tatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggttt |
385 |
Q |
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| T |
28783401 |
tatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggttt |
28783500 |
T |
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| Q |
386 |
atggtaaacaggcacagg |
403 |
Q |
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| T |
28783501 |
atggtaaacaggcacagg |
28783518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 28783448 - 28783566
Alignment:
| Q |
267 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtg |
366 |
Q |
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| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacaggtg |
28783547 |
T |
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| Q |
367 |
taggtggagggagaggttt |
385 |
Q |
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| T |
28783548 |
taggtggaggaagaggttt |
28783566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 28783382 - 28783453
Alignment:
| Q |
333 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggt |
404 |
Q |
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| T |
28783382 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggt |
28783453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 385
Target Start/End: Original strand, 28783487 - 28783599
Alignment:
| Q |
273 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtg |
372 |
Q |
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| T |
28783487 |
ggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacaggtgtaggag |
28783586 |
T |
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| Q |
373 |
gagggagaggttt |
385 |
Q |
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| T |
28783587 |
gagggataggttt |
28783599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 354
Target Start/End: Original strand, 28783553 - 28783634
Alignment:
| Q |
273 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtttct |
354 |
Q |
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| T |
28783553 |
ggaggaagaggtttctcataaacaggtgtaggaggagggataggtttttcatagataggcacaggtggaggacaaggtttct |
28783634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
| Q |
267 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg |
331 |
Q |
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| T |
28783514 |
acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg |
28783578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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