View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12210_low_7 (Length: 353)
Name: NF12210_low_7
Description: NF12210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12210_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 42795360 - 42795285
Alignment:
| Q |
209 |
tgcaagaggtgttctatttgctttatgtggattcactgtttttataactttggataattttctagtctttgtactcc |
285 |
Q |
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| T |
42795360 |
tgcaagaggtgttctatttgctttctgtggattcactgtttttataactttggataattttctagt-tttgtactcc |
42795285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 46942384 - 46942265
Alignment:
| Q |
1 |
ggtttatgttcaatgcataa--tgtgaagagcttcaatcctcacatgctaattaattctcatcgaggttgtggggttttgcttagtaatgacgttgctca |
98 |
Q |
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| T |
46942384 |
ggtttatgttcaatgaaaaacatatgaagagcttgaatcctcacatgctaattaattgtcattgaggatgtggggttttgcttagtaatgacattgctca |
46942285 |
T |
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| Q |
99 |
gtagaggtttcttcaattta |
118 |
Q |
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| T |
46942284 |
gtagtggttccctcaattta |
46942265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 46942263 - 46942165
Alignment:
| Q |
144 |
cttaacctcatgtatgtattagctgcagttatttcccaccatgaagac----------tttatttagtgtgtcaatgcaagaggtgttctatttgcttt |
232 |
Q |
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| T |
46942263 |
cttaacttcatgtatatattagctgcagttatttcccactatcaagactctttatttatttatttggtgtctaaatgcaagaggtgttctatttgcttt |
46942165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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